View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5813-Insertion-3 (Length: 798)
Name: NF5813-Insertion-3
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 322
Target Start/End: Complemental strand, 41566602 - 41566287
Alignment:
| Q |
9 |
catgggttgttcatgtatcattcgttcagataaatgaggaccacaaagtgtgtgctagaattaagacttgtaaataaggcacattagccatttggttggg |
108 |
Q |
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| T |
41566602 |
catgggttgttcatgtatcattcgttcagataaatgaggaccacaaagtgtttgctagaattaagacttgtaaataaggcacattagccatttggttggg |
41566503 |
T |
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| Q |
109 |
tgggtatatgaacccactttttcgcttnnnnnnnn--tgtgacagcaagctaaaaaaggtccatcatcatgattactgttttaatgttccacacatgatg |
206 |
Q |
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| T |
41566502 |
tgggtatatgaacccactttttcgctcaaaaaaaaaatgtgacagcaagctaaaaaaggtccatcatcatgattactgttttaatgttccacacatgatg |
41566403 |
T |
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| Q |
207 |
ttggcggtcatttacgattgtgcattttatgaagtatatcagacaaaaacttgttctagtataggagaattagataaggtagttaaagcgtcacgagtga |
306 |
Q |
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| T |
41566402 |
ttggcggtcatttacgattgtgcattttatgaagtatatcagacaaaaacttgttctagtataggagaattagataaggtagttaaagcgtcacgagtga |
41566303 |
T |
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| Q |
307 |
tgtatattatatgtta |
322 |
Q |
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| T |
41566302 |
tgtatactatatgtta |
41566287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 430 - 739
Target Start/End: Complemental strand, 41564413 - 41564102
Alignment:
| Q |
430 |
gaaactctctattcgacttattgcccgactaatttagaggattaatctaattgtccatggactaaagcctcaattaaagtcaaataaaattttgtataga |
529 |
Q |
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| T |
41564413 |
gaaactatgtattcgacttattgcccgactaatttagaggattaatctaattgtccatggactaaagcctcaattaaagtcaaataaagttttgtataga |
41564314 |
T |
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| Q |
530 |
ccgactcaacacatgaattattgacaccttnnnnnnngttcaaacataagaaaaagacagaagcatatttataaatctcaaatcttcaccaacaaatcaa |
629 |
Q |
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| T |
41564313 |
ccgactcaacacatgaattattgacaccttaaaacaagttcaaacataagaaaaagacagaagcatacttataaatctcaaatcttcaccaacaaatcaa |
41564214 |
T |
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| Q |
630 |
ctctaggttatataaacttca--nnnnnnnnactcaatattataaacattatccactacacatgccattaattaacaacaacaaccatattccatatcaa |
727 |
Q |
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| T |
41564213 |
ctcgaggttatataaacttcattttttttttactcaatattataaacattatccactacacatgccattaattaacaacatcaaccatattccatatcaa |
41564114 |
T |
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| Q |
728 |
tatttttaataa |
739 |
Q |
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| T |
41564113 |
tatttttaataa |
41564102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 731 - 798
Target Start/End: Complemental strand, 41563215 - 41563148
Alignment:
| Q |
731 |
ttttaataataaggtaatattaaagaccatatcatacatgtcattattgagaactatactgaatctgg |
798 |
Q |
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| T |
41563215 |
ttttaataataaggtaatattaaagaccatatcatacatgtcattattgagaactataccgaatctgg |
41563148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 321 - 352
Target Start/End: Complemental strand, 41564483 - 41564452
Alignment:
| Q |
321 |
tacaagtaaatgaaacatttatttattttcga |
352 |
Q |
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| T |
41564483 |
tacaagtaaatgaaacatttatttattttcga |
41564452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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