View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5813-Insertion-4 (Length: 651)

Name: NF5813-Insertion-4
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5813-Insertion-4
NF5813-Insertion-4
[»] chr7 (1 HSPs)
chr7 (8-651)||(44851205-44851838)


Alignment Details
Target: chr7 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 8 - 651
Target Start/End: Complemental strand, 44851838 - 44851205
Alignment:
Q  8 aatagaaagatgccaaatttaaaaactacctgaaattgatatgtgggatgtttgtagcatgcgatatatgaacaatacattttgttacattcttctagac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44851838 aatagaaagatgccaaatttaaaaactacctgaaattgatatgtgggatgtttgtagcatgcgatatatgaacaatacattttgttacattcttctagac 44851739  T
Q  108 aacagacacatnnnnnnnnnncacttgaatcaatcaagaaggggcaacaggaatcctttcatcagaaaaaatgctcctcgtaaagtgtaaaatagatgaa 207  Q
    |||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44851738 aacagacacataaaaaa----------aatcaatcaagaaggggcaacaggaatcctttcatcagaaaaaatgctcctcgtaaagtgtaaaatagatgaa 44851649  T
Q  208 gacataggtaactcctcaagctcatcgaaaaaatcaaattcttctgatttagatgctgacatattctttaactgtgcatagcagagtggctcttcctcta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44851648 gacataggtaactcctcaagctcatcgaaaaaatcaaattcttctgatttagatgctgacatattctttaactgtgcatagcagagtggctcttcctcta 44851549  T
Q  308 agagaagatctattttgtcaatatggcttttttctatatttagtttgaaaggatcttcttggtctataatgatgtcctctgagcagtgtgttgtagattg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44851548 agagaagatctattttgtcaatatggcttttttctatatttagtttgaaaggatcttcttggtctataatgatgtcctctgagcagtgtgttgtagattg 44851449  T
Q  408 taagtaatgaaaattttcttcatttgtaacttgatcactactactcacagtgctcttattactgttaatctcctcttctacctgtttctgttcttggttt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44851448 taagtaatgaaaattttcttcatttgtaacttgatcactactactcacagtgctcttattactgttaatctcctcttctacctgtttttgttcttggttt 44851349  T
Q  508 tcttccttagaagtaactgggagatctttggttgtttcggttttggattcttttggttgttgagctaaatttgtggtggaggagagggcagtgggatctg 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44851348 tcttccttagaagtaactgggagatctttggttgtttcggttttggattcttttggttgttgagctaaatttgtggtggaggagagggcagtgggatctg 44851249  T
Q  608 gatggttatgtgttgaagtataggtgatgatgagcaatgaagca 651  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  44851248 gatggttatgtgttgaagtataggtgatgatgagcaatgaagca 44851205  T

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