View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5813-Insertion-5 (Length: 606)
Name: NF5813-Insertion-5
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 9 - 602
Target Start/End: Original strand, 54571584 - 54572177
Alignment:
| Q |
9 |
aagagaaaggaatttgaaaatggaaaggttagggtggtgtttggaattcgttcttggagaatcaagtataaagagtgagtgtattaaggaactgattaaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
54571584 |
aagagaaaggaatttgaaaatggaaaggttagggtggtgtttggaattcgttcttggagaatcaagtatagatagtgagtgtattaaggaactgattaaa |
54571683 |
T |
|
| Q |
109 |
gtaaactcctcagttaccgaaatcaataataggaacatgagaatgattatgctgaagttccttgaagataagttgttgtccaaagcatctatagatgaat |
208 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
54571684 |
gtaaactactcagttaccgaaatcaataataggaacatgagaatgattatgctgaagttccttgaagatgagttgttgtcgaaagcatctatagatgaat |
54571783 |
T |
|
| Q |
209 |
ggatgcttgaatttctggaggtattcgaaaaactacttctaattgattgcaatgacccttcaaaccctaaccctattagcgatgccatgaaatctgctta |
308 |
Q |
| |
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||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
54571784 |
ggatgcttgaacttctcgaggtattagaaaaactacttctaattgattgcaatgacccttcaaaccctaaccctattagccatgccatgaaatctgctta |
54571883 |
T |
|
| Q |
309 |
tttctacattgctgtggaatgtacagttaagtaccttgaaacaggtggtaaatctaactacctcaaagcagcagttggcagaatatggaaccgtaggttt |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
54571884 |
tttctacattgctgtggaatgtacagttaagtaccttgaagcaggtggtacatctaactacctccaagcagcagttgacagaatatggaaccgtaggttt |
54571983 |
T |
|
| Q |
409 |
caaaaattggaggagggaagttatttgttatctccaaaatggagactctggaaaacgcttatcaatgattcccttgttgattcacaaaccatgctcagac |
508 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54571984 |
caaaaattggaggagggaagttatttgttaactccaaaatggagactctggaaaacgcttatcaatgattcccttgttgattcacaaaccatgctcagac |
54572083 |
T |
|
| Q |
509 |
ttgcttcattgtctaataccagaaagaaagccattaaagaggttcaacgctttttggtggatgctcggaatagccttgttggcccttcctttct |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
54572084 |
ttgcttcattgtctaataccagaaagaaagccattaaagaggttcaacgctttttggtggatgctcggaataaccttgttggcccttcctttct |
54572177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 9 - 602
Target Start/End: Original strand, 55154851 - 55155444
Alignment:
| Q |
9 |
aagagaaaggaatttgaaaatggaaaggttagggtggtgtttggaattcgttcttggagaatcaagtataaagagtgagtgtattaaggaactgattaaa |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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|
| T |
55154851 |
aagagaaaggaatttgaaaatggaaaggttagggtggtgtttggaattcgttcttggagaatcaagtatagatagtgagtgtattaaggaactgattaaa |
55154950 |
T |
|
| Q |
109 |
gtaaactcctcagttaccgaaatcaataataggaacatgagaatgattatgctgaagttccttgaagataagttgttgtccaaagcatctatagatgaat |
208 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
55154951 |
gtaaactactcagttaccgaaatcaataataggaacatgagaatgattatgctgaagttccttgaagatgagttgttgtcgaaagcatctatagatgaat |
55155050 |
T |
|
| Q |
209 |
ggatgcttgaatttctggaggtattcgaaaaactacttctaattgattgcaatgacccttcaaaccctaaccctattagcgatgccatgaaatctgctta |
308 |
Q |
| |
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||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
55155051 |
ggatgcttgaacttctcgaggtattagaaaaactacttctaattgattgcaatgacccttcaaaccctaaccctattagccatgccatgaaatctgctta |
55155150 |
T |
|
| Q |
309 |
tttctacattgctgtggaatgtacagttaagtaccttgaaacaggtggtaaatctaactacctcaaagcagcagttggcagaatatggaaccgtaggttt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| |
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|
| T |
55155151 |
tttctacattgctgtggaatgtacagttaagtaccttgaagcaggtggtacatctaactacctccaagcagcagttgacagaatatggaaccgtaggttt |
55155250 |
T |
|
| Q |
409 |
caaaaattggaggagggaagttatttgttatctccaaaatggagactctggaaaacgcttatcaatgattcccttgttgattcacaaaccatgctcagac |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55155251 |
caaaaattggaggagggaagttatttgttaactccaaaatggagactctggaaaacgcttatcaatgattcccttgttgattcacaaaccatgctcagac |
55155350 |
T |
|
| Q |
509 |
ttgcttcattgtctaataccagaaagaaagccattaaagaggttcaacgctttttggtggatgctcggaatagccttgttggcccttcctttct |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
55155351 |
ttgcttcattgtctaataccagaaagaaagccattaaagaggttcaacgctttttggtggatgctcggaataaccttgttggcccttcctttct |
55155444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 90 - 200
Target Start/End: Complemental strand, 20792101 - 20791994
Alignment:
| Q |
90 |
tattaaggaactgattaaagtaaactcctcagttaccgaaatcaataataggaacatgagaatgattatgctgaagttccttgaagataagttgttgtcc |
189 |
Q |
| |
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||||||||||||||||||||||| || ||| || ||||||||||||||||| |||| ||||||| | |||| | |||||||| ||||||||||| |
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| T |
20792101 |
tattaaggaactgattaaagtaatttc---agtcactgaaatcaataataggaagatgaaaatgattctattgaaaaccgttgaagatgagttgttgtcc |
20792005 |
T |
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| Q |
190 |
aaagcatctat |
200 |
Q |
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||||||||||| |
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|
| T |
20792004 |
aaagcatctat |
20791994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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