View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5813-Insertion-6 (Length: 552)
Name: NF5813-Insertion-6
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813-Insertion-6 |
 | |
|
| [»] chr8 (6 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 477; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 9 - 552
Target Start/End: Complemental strand, 35339154 - 35338610
Alignment:
| Q |
9 |
cacgtctcctatcagtagacatggcgataaacatttccctccaatctggatccttaaacttctc-aaggctttcccgtagatgtcatctgaaatgtctcc |
107 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35339154 |
cacgtctcttatcagtagacatggcgacaaacatttccctccaatctggatccttaaacttctccaaggctttcccgtagatgtcatctgaaatgtctcc |
35339055 |
T |
|
| Q |
108 |
tatctcttcaagagcaactacacacttagtaagagaacaatttgtaattacatgtgaagaactagcctccacaatcttaccccatgcctgagcccatgct |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35339054 |
tatctcttcaagagcaactacacacttagtaagagaacaatttgttgttacatgtgaagaactagcctccacaatcttaccccatgcctgagcccatgct |
35338955 |
T |
|
| Q |
208 |
gcaattgcatctcccatctgacgtgatgtagactctttcttggatgtacgatcttttacttgaattttttgcttctctctgcatgtgatgcactccactt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35338954 |
gcaattgcatctcccatctgacgtgatgtagacactttctcggatgtacgatcttttagttgaattttttgcttccctctgcatgtgatgcactccactt |
35338855 |
T |
|
| Q |
308 |
cttgcataccattgtctgaactatcattatcaacacatacataattcgcaatcctagtgttaaaatattgattatcatgctcattttctttgttggtatt |
407 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35338854 |
cttgtataccattgtctgaactatcattatcaacacatacacaattcgcactcctagtgttaaaatattgattatcatgctcattttctttattggtatt |
35338755 |
T |
|
| Q |
408 |
tggttggtcttgggcaattgaatgatgaagtacttcagtttcattatatttgttgaatatgatttccaacaacctataatggtcgcaccctttattttaa |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
35338754 |
tggttggtcttgggcaattgaatgatgaagtacttcagtttcattatatttgttgaatatgatttccaacaacctataatggtcacaccctttattttga |
35338655 |
T |
|
| Q |
508 |
aactgagatgttttatcatgtgtctaaaataatataagcatatcg |
552 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35338654 |
aactgagatgctttatcatgtgtctaaaataatataagcatatcg |
35338610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 552
Target Start/End: Original strand, 19512060 - 19512586
Alignment:
| Q |
15 |
tcctatcagtagacatggcgataaacatttccctccaatctggatccttaaacttctc-aaggctttcccgtagatgtcatctgaaatgtctcctatctc |
113 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||| ||||||||||| || || ||||||||||| ||||||||||||||||||||| | ||||| |
|
|
| T |
19512060 |
tcctatctttagacatagcgataaacatttccctccaatcaggatccttaaatttttccaaggctttcccatagatgtcatctgaaatgtcttcaatctc |
19512159 |
T |
|
| Q |
114 |
ttcaagagcaactacacacttagtaagagaacaatttgtaattacatgtgaagaactagcctccacaatcttaccccatgcctgagcccatgctgcaatt |
213 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||| | | |||||||||||||||||||||||||||||||||||| | | | ||| | |
|
|
| T |
19512160 |
ttcaagagcaaccacacacttagtaagagagcaatcttttgttacatgtgaagaactagcctccacaatcttaccccgttc------------tacaagt |
19512247 |
T |
|
| Q |
214 |
gcatctcccatctgacgtgatgtagactctttcttggatgtacgatcttttacttgaattttttgcttctctctgcatgtgatgcactccacttcttgca |
313 |
Q |
| |
|
|| ||||| || ||| ||| ||||||||||||| || || || | |||||||||| ||| ||||||||||| |||||||||||| | |||||||||| | |
|
|
| T |
19512248 |
gcttctcctatttgatgtgttgtagactctttcctgaatatatgctcttttacttcaatcttttgcttctcattgcatgtgatgcgccccacttcttgaa |
19512347 |
T |
|
| Q |
314 |
taccattgtctgaactatcattatcaacacatacataattcgcaatcctagtgttaaaatattgattatcatgctcattttctttgttggtatttggttg |
413 |
Q |
| |
|
|| |||||| ||||||||||| ||||||||||||| ||| ||| |||| |||||||| |||||||||| ||||||||||||| | |||||||||||| |
|
|
| T |
19512348 |
tatcattgtttgaactatcatcatcaacacatacaatatttgcactcctggtgttaaagtattgattattgagctcattttctttatcggtatttggttg |
19512447 |
T |
|
| Q |
414 |
gtcttgggcaattgaatgatgaagtacttcagtttcattatatttgttgaatatgatttccaacaacctataatggtcgcaccctttattttaaaactga |
513 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
19512448 |
gtcttgggtaaatgaatgatgaagtacttcagtttcattatttttgttgaatatgatttccaacaacttataatggtcgcaccctttattttgaaactga |
19512547 |
T |
|
| Q |
514 |
gatgttttatcatgtgtctaaaataatataagcatatcg |
552 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19512548 |
gatgctttatcatgtgtctaaaataatataagcatatcg |
19512586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 373 - 512
Target Start/End: Original strand, 21117402 - 21117541
Alignment:
| Q |
373 |
tattgattatcatgctcattttctttgttggtatttggttggtcttgggcaattgaatgatgaagtacttcagtttcattatatttgttgaatatgattt |
472 |
Q |
| |
|
||||||| |||| |||||||||| | | || |||||| ||||||||| | |||||||||||||||| ||| | |||||| ||||||||||||||| | |
|
|
| T |
21117402 |
tattgatcatcaagctcattttcgtcatctgtgtttggtgggtcttgggtagatgaatgatgaagtactccagctgcattatttttgttgaatatgatat |
21117501 |
T |
|
| Q |
473 |
ccaacaacctataatggtcgcaccctttattttaaaactg |
512 |
Q |
| |
|
||| |||| | ||||| || |||||||| |||| |||||| |
|
|
| T |
21117502 |
ccagcaacttgtaatgatcacaccctttcttttgaaactg |
21117541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 148
Target Start/End: Original strand, 10626196 - 10626330
Alignment:
| Q |
15 |
tcctatcagtagacatggcgataaacatttccctccaatctggatccttaaacttct-caaggctttcccgtagatgtcatctgaaatgtctcctatctc |
113 |
Q |
| |
|
|||| ||| ||| ||||||||||||||||| ||||||||| | |||||||||||| | ||| ||||| || ||| | ||||||||||||||| ||| | |
|
|
| T |
10626196 |
tcctctcattaggcatggcgataaacatttacctccaatcagaatccttaaacttttccaaagcttttccataggtatcatctgaaatgtcttctagtcc |
10626295 |
T |
|
| Q |
114 |
ttcaagagcaactacacacttagtaagagaacaat |
148 |
Q |
| |
|
|| |||||| | |||||||| ||||||||||||| |
|
|
| T |
10626296 |
atcgagagcagccacacacttggtaagagaacaat |
10626330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 406 - 512
Target Start/End: Original strand, 10626584 - 10626690
Alignment:
| Q |
406 |
tttggttggtcttgggcaattgaatgatgaagtacttcagtttcattatatttgttgaatatgatttccaacaacctataatggtcgcaccctttatttt |
505 |
Q |
| |
|
|||||| ||||||||| | |||||||||||||||| ||| | |||||| ||||||||||||||| |||| |||| | ||||| || |||||||| |||| |
|
|
| T |
10626584 |
tttggtgggtcttgggtagatgaatgatgaagtactccagctgcattatttttgttgaatatgatatccagcaacttgtaatgatcacaccctttctttt |
10626683 |
T |
|
| Q |
506 |
aaaactg |
512 |
Q |
| |
|
|||||| |
|
|
| T |
10626684 |
gaaactg |
10626690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 148
Target Start/End: Original strand, 21117022 - 21117156
Alignment:
| Q |
15 |
tcctatcagtagacatggcgataaacatttccctccaatctggatccttaaacttct-caaggctttcccgtagatgtcatctgaaatgtctcctatctc |
113 |
Q |
| |
|
|||| ||| ||| ||||||||||||||||||||||||||| | |||||||||||| | ||| ||||| | ||| | ||||||||||||||| ||| | |
|
|
| T |
21117022 |
tcctctcattaggcatggcgataaacatttccctccaatcagaatccttaaacttttccaaagctttttcataggtatcatctgaaatgtcttctagtcc |
21117121 |
T |
|
| Q |
114 |
ttcaagagcaactacacacttagtaagagaacaat |
148 |
Q |
| |
|
|| |||||| | |||||||| ||||||||||||| |
|
|
| T |
21117122 |
atcgagagcagccacacacttggtaagagaacaat |
21117156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 552
Target Start/End: Complemental strand, 18368579 - 18368053
Alignment:
| Q |
15 |
tcctatcagtagacatggcgataaacatttccctccaatctggatccttaaacttctc-aaggctttcccgtagatgtcatctgaaatgtctcctatctc |
113 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||| ||||||||||| || || ||||||||||| ||||||||||||||||||||| | ||||| |
|
|
| T |
18368579 |
tcctatctttagacatagcgataaacatttccctccaatcaggatccttaaatttttccaaggctttcccatagatgtcatctgaaatgtcttcaatctc |
18368480 |
T |
|
| Q |
114 |
ttcaagagcaactacacacttagtaagagaacaatttgtaattacatgtgaagaactagcctccacaatcttaccccatgcctgagcccatgctgcaatt |
213 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||| | | |||||||||||||||||||||||||||||||||||| | | | ||| | |
|
|
| T |
18368479 |
ttcaagagcaaccacacacttagtaagagagcaatcttttgttacatgtgaagaactagcctccacaatcttaccccgttc------------tacaagt |
18368392 |
T |
|
| Q |
214 |
gcatctcccatctgacgtgatgtagactctttcttggatgtacgatcttttacttgaattttttgcttctctctgcatgtgatgcactccacttcttgca |
313 |
Q |
| |
|
|| ||||| || ||| ||| ||||||||||||| || || || | |||||||||| ||| ||||||||||| |||||||||||| | |||||||||| | |
|
|
| T |
18368391 |
gcttctcctatttgatgtgttgtagactctttcctgaatatatgctcttttacttcaatcttttgcttctcattgcatgtgatgcgccccacttcttgaa |
18368292 |
T |
|
| Q |
314 |
taccattgtctgaactatcattatcaacacatacataattcgcaatcctagtgttaaaatattgattatcatgctcattttctttgttggtatttggttg |
413 |
Q |
| |
|
|| |||||| ||||||||||| ||||||||||||| ||| ||| |||| |||||||| |||||||||| ||||||||||||| | |||||||||||| |
|
|
| T |
18368291 |
tatcattgtttgaactatcatcatcaacacatacaatatttgcactcctggtgttaaagtattgattattgagctcattttctttatcggtatttggttg |
18368192 |
T |
|
| Q |
414 |
gtcttgggcaattgaatgatgaagtacttcagtttcattatatttgttgaatatgatttccaacaacctataatggtcgcaccctttattttaaaactga |
513 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
18368191 |
gtcttgggtaaatgaatgatgaagtacttcagtttcattatttttgttgaatatgatttccaacaacttataatggtcgcaccctttattttgaaactga |
18368092 |
T |
|
| Q |
514 |
gatgttttatcatgtgtctaaaataatataagcatatcg |
552 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18368091 |
gatgctttatcatgtgtctaaaataatataagcatatcg |
18368053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 552
Target Start/End: Original strand, 36594344 - 36594870
Alignment:
| Q |
15 |
tcctatcagtagacatggcgataaacatttccctccaatctggatccttaaacttctc-aaggctttcccgtagatgtcatctgaaatgtctcctatctc |
113 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||| ||||||||||| || || ||||||||||| ||||||||||||||||||||| | ||||| |
|
|
| T |
36594344 |
tcctatctttagacatagcgataaacatttccctccaatcaggatccttaaatttttccaaggctttcccatagatgtcatctgaaatgtcttcaatctc |
36594443 |
T |
|
| Q |
114 |
ttcaagagcaactacacacttagtaagagaacaatttgtaattacatgtgaagaactagcctccacaatcttaccccatgcctgagcccatgctgcaatt |
213 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||| | | |||||||||||||||||||||||||||||||||||| | | | ||| | |
|
|
| T |
36594444 |
ttcaagagcaaccacacacttagtaagagagcaatcttttgttacatgtgaagaactagcctccacaatcttaccccgttc------------tacaagt |
36594531 |
T |
|
| Q |
214 |
gcatctcccatctgacgtgatgtagactctttcttggatgtacgatcttttacttgaattttttgcttctctctgcatgtgatgcactccacttcttgca |
313 |
Q |
| |
|
|| ||||| || ||| ||| ||||||||||||| || || || | |||||||||| ||| ||||||||||| |||||||||||| | |||||||||| | |
|
|
| T |
36594532 |
gcttctcctatttgatgtgttgtagactctttcctgaatatatgctcttttacttcaatcttttgcttctcattgcatgtgatgcgccccacttcttgaa |
36594631 |
T |
|
| Q |
314 |
taccattgtctgaactatcattatcaacacatacataattcgcaatcctagtgttaaaatattgattatcatgctcattttctttgttggtatttggttg |
413 |
Q |
| |
|
|| |||||| ||||||||||| ||||||||||||| ||| ||| |||| |||||||| |||||||||| ||||||||||||| | |||||||||||| |
|
|
| T |
36594632 |
tatcattgtttgaactatcatcatcaacacatacaatatttgcactcctggtgttaaagtattgattattgagctcattttctttatcggtatttggttg |
36594731 |
T |
|
| Q |
414 |
gtcttgggcaattgaatgatgaagtacttcagtttcattatatttgttgaatatgatttccaacaacctataatggtcgcaccctttattttaaaactga |
513 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
36594732 |
gtcttgggtaaatgaatgatgaagtacttcagtttcattatttttgttgaatatgatttccaacaacttataatggtcgcaccctttattttgaaactga |
36594831 |
T |
|
| Q |
514 |
gatgttttatcatgtgtctaaaataatataagcatatcg |
552 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36594832 |
gatgctttatcatgtgtctaaaataatataagcatatcg |
36594870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 373 - 512
Target Start/End: Original strand, 1240482 - 1240621
Alignment:
| Q |
373 |
tattgattatcatgctcattttctttgttggtatttggttggtcttgggcaattgaatgatgaagtacttcagtttcattatatttgttgaatatgattt |
472 |
Q |
| |
|
||||||| |||| |||||||||| | | || |||||| ||||||||| | |||||||||||||||| ||| | |||||| ||||||||||||||| | |
|
|
| T |
1240482 |
tattgatcatcaagctcattttcgtcatctgtgtttggtgggtcttgggtagatgaatgatgaagtactccagctgcattatttttgttgaatatgatat |
1240581 |
T |
|
| Q |
473 |
ccaacaacctataatggtcgcaccctttattttaaaactg |
512 |
Q |
| |
|
||| |||| | |||||||| |||||||| |||| |||||| |
|
|
| T |
1240582 |
ccagcaacttgtaatggtcacaccctttcttttgaaactg |
1240621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 148
Target Start/End: Original strand, 1240102 - 1240236
Alignment:
| Q |
15 |
tcctatcagtagacatggcgataaacatttccctccaatctggatccttaaacttct-caaggctttcccgtagatgtcatctgaaatgtctcctatctc |
113 |
Q |
| |
|
|||| ||| ||| ||||||||||||||||||||||||||| | |||||||||||| | ||| ||||| || ||| | ||||||||||||||| ||| | |
|
|
| T |
1240102 |
tcctctcattaggcatggcgataaacatttccctccaatcagaatccttaaacttttccaaagcttttccataggtatcatctgaaatgtcttctagtcc |
1240201 |
T |
|
| Q |
114 |
ttcaagagcaactacacacttagtaagagaacaat |
148 |
Q |
| |
|
|| |||||| | |||||||| ||||||||||||| |
|
|
| T |
1240202 |
atcgagagcagccacacacttggtaagagaacaat |
1240236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 552
Target Start/End: Original strand, 42599840 - 42600371
Alignment:
| Q |
9 |
cacgtctcctatcagtagacatggcgataaacatttccctccaatctggatccttaaacttctc-aaggctttcccgtagatgtcatctgaaatgtctcc |
107 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||| || |||||||| ||| |||||||||||||||||||| | |
|
|
| T |
42599840 |
cacgtctcctatcattagacatggccataaacatttccctccaatcaggatccttaaacttttccaaggcttttccgaagatgtcatctgaaatgtcttc |
42599939 |
T |
|
| Q |
108 |
tatctcttcaagagcaactacacacttagtaagagaacaatttgtaattacatgtgaagaactagcctccacaatcttaccccatgcctgagcccatgct |
207 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||| | | || ||||||||||| |||||||||||||||||||| |||| ||| ||| |
|
|
| T |
42599940 |
tatctcttcaagagcaatcacacactttgtaagagaacaatctattgttccatgtgaagaagtagcctccacaatcttacccgatgc---agc--atg-- |
42600032 |
T |
|
| Q |
208 |
gcaattgcatctcccatctgacgtgatgtagactctttcttggatgtacgatcttttacttgaattttttgcttctctctgcatgtgatgcactccactt |
307 |
Q |
| |
|
|||||| |||||| ||| ||||||||||||||| |||||||| |||||||||||||| |||||||||| | ||| ||||||||| ||||| || |
|
|
| T |
42600033 |
-----tgcatcgcccatccgacccgatgtagactctttcatggatgtatgatcttttacttgatgtttttgcttcccactggatgtgatgctctccaatt |
42600127 |
T |
|
| Q |
308 |
cttgcataccattgtctgaactatcattatcaacacatacataattcgcaatcctagtgttaaaatattgattatcatgctcattttctttgttggtatt |
407 |
Q |
| |
|
|||| ||| |||||| ||||||||||||||||||| ||||| |||| || ||| | ||||| || |||||||||| ||||||||||||| | |||||| |
|
|
| T |
42600128 |
cttgtatatcattgtttgaactatcattatcaacagatacaaaattaacactcccaatgttacaacattgattatccagctcattttctttatcggtatt |
42600227 |
T |
|
| Q |
408 |
tggttggtcttgggcaattgaatgatgaagtacttcagtttcattatatttgttgaatatgatttccaacaacctataatggtcgcaccctttattttaa |
507 |
Q |
| |
|
|||| ||||||||| | ||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| |||||| || ||||| |||| | |
|
|
| T |
42600228 |
tggtgggtcttgggtatatgactgatgaagtacttctctttcattatttttgttgaatatgatttccaacaacttat-atggtcacaacctttcttttga |
42600326 |
T |
|
| Q |
508 |
aactgagatgttttatcatgtgtctaaaataatataagcatatcg |
552 |
Q |
| |
|
|| ||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
42600327 |
aattgagatgctttataatgtgtctaaaataatataagcatatcg |
42600371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 21326820 - 21326960
Alignment:
| Q |
9 |
cacgtctcctatcagtagacatggcgataaacatttccctccaatctggatccttaaact-tctcaaggctttcccgtagatgtcatctgaaatgtctcc |
107 |
Q |
| |
|
||||||||| |||| | |||||| ||||||||||||| |||||||| ||||||||||||| | ||||||||||| | || ||||||| |||||||||| | |
|
|
| T |
21326820 |
cacgtctccgatcattcgacatgacgataaacatttctctccaatcaggatccttaaactctttcaaggctttcacataaatgtcatttgaaatgtcttc |
21326919 |
T |
|
| Q |
108 |
tatctcttcaagagcaactacacacttagtaagagaacaat |
148 |
Q |
| |
|
|||||||||||||||| | |||||||| |||| |||||||| |
|
|
| T |
21326920 |
tatctcttcaagagcagcaacacacttggtaatagaacaat |
21326960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 406 - 512
Target Start/End: Original strand, 38274586 - 38274692
Alignment:
| Q |
406 |
tttggttggtcttgggcaattgaatgatgaagtacttcagtttcattatatttgttgaatatgatttccaacaacctataatggtcgcaccctttatttt |
505 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||| | || |||||| |||||||||| |||||||||||||| |||||||||| |||||||| |||| |
|
|
| T |
38274586 |
tttggtgggtcttgggcaaatgaatgatgaagtactccggtggcattatttttgttgaatttgatttccaacaacttataatggtcacaccctttctttt |
38274685 |
T |
|
| Q |
506 |
aaaactg |
512 |
Q |
| |
|
|||||| |
|
|
| T |
38274686 |
gaaactg |
38274692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 373 - 512
Target Start/End: Complemental strand, 12835664 - 12835525
Alignment:
| Q |
373 |
tattgattatcatgctcattttctttgttggtatttggttggtcttgggcaattgaatgatgaagtacttcagtttcattatatttgttgaatatgattt |
472 |
Q |
| |
|
||||||| |||| |||||||||| | | || |||||| ||||||||| | |||||||||||||||| ||| | |||||| ||||||||||||||| | |
|
|
| T |
12835664 |
tattgatcatcaagctcattttcgtcatatgtgtttggtgggtcttgggtagatgaatgatgaagtactccagctacattatttttgttgaatatgatat |
12835565 |
T |
|
| Q |
473 |
ccaacaacctataatggtcgcaccctttattttaaaactg |
512 |
Q |
| |
|
|||||||| || ||||||| |||| |||||||| |||||| |
|
|
| T |
12835564 |
ccaacaacttacaatggtcacaccatttattttgaaactg |
12835525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 12836044 - 12835910
Alignment:
| Q |
15 |
tcctatcagtagacatggcgataaacatttccctccaatctggatccttaaacttct-caaggctttcccgtagatgtcatctgaaatgtctcctatctc |
113 |
Q |
| |
|
|||| ||| ||| ||||||||||||||||||||||||||| | |||||||||||| | ||| ||||| || ||| | ||||||||||||||| ||| | |
|
|
| T |
12836044 |
tcctctcattaggcatggcgataaacatttccctccaatcagaatccttaaacttttccaaagcttttccataggtatcatctgaaatgtcttctagtcc |
12835945 |
T |
|
| Q |
114 |
ttcaagagcaactacacacttagtaagagaacaat |
148 |
Q |
| |
|
|| |||||| | |||||||| ||||||||||||| |
|
|
| T |
12835944 |
atcgagagcagccacacacttggtaagagaacaat |
12835910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 461 - 551
Target Start/End: Original strand, 21327201 - 21327291
Alignment:
| Q |
461 |
tgaatatgatttccaacaacctataatggtcgcaccctttattttaaaactgagatgttttatcatgtgtctaaaataatataagcatatc |
551 |
Q |
| |
|
||||||||||| |||||||| |||| || || |||||||| |||| |||||||| ||||||||||| || |||||||||||| |||||||| |
|
|
| T |
21327201 |
tgaatatgattcccaacaacttatagtgatcacaccctttcttttgaaactgagttgttttatcatttgcctaaaataatatcagcatatc |
21327291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 148
Target Start/End: Original strand, 29518538 - 29518668
Alignment:
| Q |
15 |
tcctatcagtagacatggcgataaacatttccctccaatctggatccttaaacttct-caaggctttcccgtagatgtcatctgaaatgtctcctatctc |
113 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| || || ||||||||||||||| ||| || |
|
|
| T |
29518538 |
tcctctcattagacatggcgataaacatttccctccaa----gatccttaaacttttccaaggcttttccataagcatcatctgaaatgtcttctagttc |
29518633 |
T |
|
| Q |
114 |
ttcaagagcaactacacacttagtaagagaacaat |
148 |
Q |
| |
|
|| |||||| | |||||||| ||||||||||||| |
|
|
| T |
29518634 |
atcgagagcatccacacacttggtaagagaacaat |
29518668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 5333524 - 5333403
Alignment:
| Q |
24 |
tagacatggcgataaacatttccctccaatctggatccttaaacttct-caaggctttcccgtagatgtcatctgaaatgtctcctatctcttcaagagc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| || || ||||||||||||||| ||| || || ||||| |
|
|
| T |
5333524 |
tagacatggcgataaacatttccctccaa----gatccttaaacttttccaaggcttttccataagcatcatctgaaatgtcttctagttcatcgagagc |
5333429 |
T |
|
| Q |
123 |
aactacacacttagtaagagaacaat |
148 |
Q |
| |
|
| | |||||||| ||||||||||||| |
|
|
| T |
5333428 |
atccacacacttggtaagagaacaat |
5333403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 45805179 - 45805219
Alignment:
| Q |
29 |
atggcgataaacatttccctccaatctggatccttaaactt |
69 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
45805179 |
atggccataaacatttccctccaatcaggatccttaaactt |
45805219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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