View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5813-Insertion-8 (Length: 431)

Name: NF5813-Insertion-8
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5813-Insertion-8
NF5813-Insertion-8
[»] chr7 (1 HSPs)
chr7 (9-431)||(48546341-48546760)


Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 9 - 431
Target Start/End: Original strand, 48546341 - 48546760
Alignment:
Q  9 acataaacagaccaaactactacttctctgtccttaactgatcctaagtaatctgcctnnnnnnnnnnnntaactgtaaggaaaaataaatgaatggatg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||| |||||||||||||||||||||||    
T  48546341 acataaacagaccaaactactacttctctgtccttaactgatcctaagtaatctgcctaaaaaaaaa---taactgcaaggaaaaataaatgaatggatg 48546437  T
Q  109 aacaatttccctccctctctcagttcaaataattggtctcatgatccataggcaagactttactcaaaatacagttgattctgaagtttagttaagactt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48546438 aacaatttccctccctctctcagttcaaataattggtctcatgatccataggcaagactttactcaaaatacagttgattctgaagtttagttaagactt 48546537  T
Q  209 ccgagcaatcagacaagctcaaccaaaatcataccagtttactgatttgggaagacatctctatatttagcatcctcaattgacaaatgctagctacctt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48546538 ccgagcaatcagacaagctcaaccaaaatcataccagtttactgatttgggaagacatctctatatttagcatcctcaattgacaaatgctagctacctt 48546637  T
Q  309 gcccgtgagcatcctcaattgacaaatgctagctaccttgcccgcgaactcaaaagcttctgagctattctatcttttgacgttactttctttttcagca 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48546638 gcccgtgagcatcctcaattgacaaatgctagctaccttgcccgcgaactcaaaagcttctgagctattctatcttttgacgttactttctttttcagca 48546737  T
Q  409 tggatgcgtgacttgctttcttg 431  Q
    |||||||| ||||||||||||||    
T  48546738 tggatgcgagacttgctttcttg 48546760  T

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