View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5813-Insertion-9 (Length: 270)
Name: NF5813-Insertion-9
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813-Insertion-9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 45646633 - 45646372
Alignment:
| Q |
9 |
gtattgactatactgtaggtggactgaacccacctcacactcacccacgtgcaactgagattgtttatgttcttgaaggtcaattagatgttgggttcat |
108 |
Q |
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| T |
45646633 |
gtattgactatgctgtaggtggactgaacccacctcacactcacccacgtgcaactgagattgtttatgttcttgaaggtcaattagatgttgggttcat |
45646534 |
T |
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| Q |
109 |
aacaacagctaatgttttgatatcaaagactattgttaagggtgaaacatttgtgtttcctaaaggattggttcatttccaaaagaacagtggttatgta |
208 |
Q |
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| T |
45646533 |
aacaacagctaatgttttgatatcaaagactattgttaagggtgaaacatttgtgtttcctaaaggattggttcatttccaaaagaacagtggttatgta |
45646434 |
T |
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| Q |
209 |
cctgctgcagtgattgcaggattcaatagtcaatcgcaaggaacagtgaatattcctcttac |
270 |
Q |
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| T |
45646433 |
cctgctgcagtgattgcaggattcaatagtcaattgcaaggaacagtgaatattcctcttac |
45646372 |
T |
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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 38013346 - 38013535
Alignment:
| Q |
25 |
aggtggactgaacccacctcacactcacccacgtgcaactgagattgtttatgttcttgaaggtcaattagatgttgggttcataacaacagctaatgtt |
124 |
Q |
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|||||| || ||||||||||||||||||||||| || || ||| | || | ||| |||||||| ||| ||||||||||||||||||| ||||| ||||| |
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| T |
38013346 |
aggtggcctcaacccacctcacactcacccacgcgccaccgaggtggtgtttgtgcttgaaggccaactagatgttgggttcataaccacagccaatgtg |
38013445 |
T |
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| Q |
125 |
ttgatatcaaagactattgttaagggtgaaacatttgtgtttcctaaaggattggttcatttccaaaagaacagtggttatgtacctgct |
214 |
Q |
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| T |
38013446 |
ctcatatcaaagactattagcaagggtgagatatttgtgttcccaaaaggcttagttcacttccaaaagaacaatgccaatgtacctgct |
38013535 |
T |
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