View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5813_high_1 (Length: 851)

Name: NF5813_high_1
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5813_high_1
NF5813_high_1
[»] chr3 (7 HSPs)
chr3 (275-814)||(13031113-13031649)
chr3 (275-489)||(15714315-15714527)
chr3 (275-489)||(19021957-19022169)
chr3 (275-489)||(17720728-17720940)
chr3 (275-395)||(4175941-4176061)
chr3 (276-397)||(15260226-15260347)
chr3 (442-489)||(4175860-4175907)
[»] chr6 (2 HSPs)
chr6 (260-758)||(12431525-12432024)
chr6 (756-814)||(12432787-12432845)
[»] chr7 (8 HSPs)
chr7 (257-490)||(39286126-39286357)
chr7 (268-354)||(5212568-5212654)
chr7 (20-127)||(8777689-8777796)
chr7 (257-354)||(17218913-17219010)
chr7 (358-483)||(13937196-13937319)
chr7 (449-518)||(17218765-17218833)
chr7 (259-351)||(9987035-9987127)
chr7 (276-314)||(13937136-13937174)
[»] chr4 (5 HSPs)
chr4 (261-478)||(8515786-8516002)
chr4 (261-489)||(18749034-18749260)
chr4 (261-489)||(2302605-2302831)
chr4 (355-489)||(30230607-30230739)
chr4 (263-375)||(9575109-9575220)
[»] chr2 (4 HSPs)
chr2 (646-814)||(23002521-23002689)
chr2 (41-220)||(17986158-17986337)
chr2 (262-483)||(31139842-31140050)
chr2 (607-644)||(23002619-23002656)
[»] chr1 (3 HSPs)
chr1 (275-489)||(30774691-30774903)
chr1 (268-489)||(23246211-23246430)
chr1 (42-220)||(20749301-20749479)
[»] chr5 (5 HSPs)
chr5 (257-397)||(35794915-35795055)
chr5 (269-400)||(1643162-1643292)
chr5 (343-490)||(21803613-21803758)
chr5 (343-490)||(21723876-21724021)
chr5 (338-398)||(19589790-19589850)
[»] chr8 (3 HSPs)
chr8 (259-365)||(14330332-14330438)
chr8 (261-489)||(24251022-24251237)
chr8 (409-490)||(14330469-14330550)
[»] scaffold0094 (1 HSPs)
scaffold0094 (260-518)||(6296-6543)


Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 275 - 814
Target Start/End: Complemental strand, 13031649 - 13031113
Alignment:
Q  275 ttttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagagaaattttcatcccaaatccgtcccaaaatcgtgtga 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||    
T  13031649 ttttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagcgaaattttcgtcccaaatccatcccaaaatcgtgtga 13031550  T
Q  375 aatatttatgacatgttcaaacaaggnnnnnnnncccacaaatttcgcacggatttccttnnnnnnncaaatccgtcccaaatccgtgtgaaatattgag 474  Q
    ||||||||||||||||||||||||||        |||||||||||||||||||||| |||       |||||||||||||||||||||||||||||||||    
T  13031549 aatatttatgacatgttcaaacaaggttttttt-cccacaaatttcgcacggattttcttaaaaaaacaaatccgtcccaaatccgtgtgaaatattgag 13031451  T
Q  475 acggatttcgaacggataataatttgaaggttttaattttatttctaatttgtgcacatttcaaataccgtcccaaatctgtgtgaaatattgggacgga 574  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  13031450 acggatttcagacggataataatttgaaggttttaattttatttctaatttgtgcacatttcaaataccgtcccaaatctgtctgaaatattgagacgga 13031351  T
Q  575 tttcagatggaatacgagatgtagcttattatttttatttccgtgtattccgtcccaaatccgtgtgaaagtttgagacaaattttagaccatatttaac 674  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13031350 tttcagatggaatacgagatgtagcttattatttttatttacgtgtattccgtcccaaatccgtgtgaaagtttgagacaaattttagaccatatttaac 13031251  T
Q  675 atatttttatttccgtgaattccgtcccaaatctatgggaaactattgagacagatttcagataaagtaatttatttatatataatagaatagttgtgaa 774  Q
    |||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||  ||| |||||||||||| | ||||||||||||||||||||||    
T  13031250 atatttttatttccatgaattccgtcccaaatccgtgggaaactattgagacagatt--agacaaagtaatttatctgtatataatagaatagttgtgaa 13031153  T
Q  775 agataaaccctaatgtgttaatcttgtgtgcctccttcat 814  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  13031152 agataaaccctaatgtgttattcttgtgtgcctccttcat 13031113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 275 - 489
Target Start/End: Original strand, 15714315 - 15714527
Alignment:
Q  275 ttttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagagaaattttcatcccaaatccgtcccaaaatcgtgtga 374  Q
    |||||||||||||  ||||||||||||||| ||||||||||||| |||| ||||  | |||| | ||||||| |||||||||||||||||||||||||||    
T  15714315 ttttcggacggatgtgtttttgtctgaatttttcggacggattttggacggtttgtaaggagcgtaattttcgtcccaaatccgtcccaaaatcgtgtga 15714414  T
Q  375 aatatttatgacatgttcaaacaaggnnnnnnnncccacaaatttcgcacggatttccttnnnnnnncaaatccgtcccaaatccgtgtgaaatattgag 474  Q
    ||| ||||||||||||||||| ||||        ||||| ||||||||||||||||| ||       ||||| |||||||||||||||||||||||||||    
T  15714415 aatttttatgacatgttcaaa-aagg-tttttttcccacgaatttcgcacggatttcattaaaaaaacaaattcgtcccaaatccgtgtgaaatattgag 15714512  T
Q  475 acggatttcgaacgg 489  Q
    |||| ||||| ||||    
T  15714513 acggttttcggacgg 15714527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 275 - 489
Target Start/End: Complemental strand, 19022169 - 19021957
Alignment:
Q  275 ttttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagagaaattttcatcccaaatccgtcccaaaatcgtgtga 374  Q
    |||||||||||||||  ||||||||||||| |||||||||||||||||| |||| ||||||| ||||||| | |||||||||||||||||||||||||||    
T  19022169 ttttcggacggatacaattttgtctgaatttttcggacggatttgggacggttttaacggagcgaaatttccgtcccaaatccgtcccaaaatcgtgtga 19022070  T
Q  375 aatatttatgacatgttcaaacaaggnnnnnnnncccacaaatttcgcacggatttccttnnnnnnncaaatccgtcccaaatccgtgtgaaatattgag 474  Q
    ||  |  |||||||||||||||| ||        ||||| ||||||||| ||||||| ||       ||| ||||||||||| |||||||||||||||||    
T  19022069 aaattgcatgacatgttcaaacaggg--ttttttcccacgaatttcgcatggatttcttttaaaaaacaattccgtcccaaaaccgtgtgaaatattgag 19021972  T
Q  475 acggatttcgaacgg 489  Q
    |||||||||| ||||    
T  19021971 acggatttcggacgg 19021957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 275 - 489
Target Start/End: Complemental strand, 17720940 - 17720728
Alignment:
Q  275 ttttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagagaaattttcatcccaaatccgtcccaaaatcgtgtga 374  Q
    |||||||||||||||  ||||||||||||| |||||||||||||||||| |||| ||||||| ||||||| | ||||||||| |||||||||||||||||    
T  17720940 ttttcggacggatacaattttgtctgaatttttcggacggatttgggacggttttaacggagcgaaatttccgtcccaaatcngtcccaaaatcgtgtga 17720841  T
Q  375 aatatttatgacatgttcaaacaaggnnnnnnnncccacaaatttcgcacggatttccttnnnnnnncaaatccgtcccaaatccgtgtgaaatattgag 474  Q
    ||  |  |||||||||||||||| ||        ||||| ||||||||| ||||||| ||       ||| ||||||||||| |||||||||||||||||    
T  17720840 aaattgcatgacatgttcaaacaggg--ttttttcccacgaatttcgcatggatttcttttaaaaaacaattccgtcccaaaaccgtgtgaaatattgag 17720743  T
Q  475 acggatttcgaacgg 489  Q
    |||||||||| ||||    
T  17720742 acggatttcggacgg 17720728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 275 - 395
Target Start/End: Complemental strand, 4176061 - 4175941
Alignment:
Q  275 ttttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagagaaattttcatcccaaatccgtcccaaaatcgtgtga 374  Q
    |||||||||||||  ||||||||||||||| |||||||||||||||||  ||||  | |||| | ||||||| |||||||||||||||||||||||||||    
T  4176061 ttttcggacggatgtgtttttgtctgaatttttcggacggatttgggatggtttgtaaggagcgtaattttcgtcccaaatccgtcccaaaatcgtgtga 4175962  T
Q  375 aatatttatgacatgttcaaa 395  Q
    ||| |||||||||||||||||    
T  4175961 aatttttatgacatgttcaaa 4175941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 276 - 397
Target Start/End: Complemental strand, 15260347 - 15260226
Alignment:
Q  276 tttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagagaaattttcatcccaaatccgtcccaaaatcgtgtgaa 375  Q
    |||| |||||||||| |||||| |||||| |||||||||||||| ||| |||| |||||||  |||||||| ||| ||||||||||||||||||||||||    
T  15260347 tttcagacggatacgattttgtttgaatttttcggacggatttgagacggttttaacggagcaaaattttcgtcctaaatccgtcccaaaatcgtgtgaa 15260248  T
Q  376 atatttatgacatgttcaaaca 397  Q
    |  |||||||||||||||||||    
T  15260247 aattttatgacatgttcaaaca 15260226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 442 - 489
Target Start/End: Complemental strand, 4175907 - 4175860
Alignment:
Q  442 caaatccgtcccaaatccgtgtgaaatattgagacggatttcgaacgg 489  Q
    |||||| |||||||||||||| ||||||||||||||| ||||| ||||    
T  4175907 caaatctgtcccaaatccgtgggaaatattgagacggttttcggacgg 4175860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 260 - 758
Target Start/End: Original strand, 12431525 - 12432024
Alignment:
Q  260 tgttttcagacggaattttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagagaaattttcatcccaaatccgt 359  Q
    ||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||    
T  12431525 tgttttcggacagaattttcggacggataggtttttgtctgaattgttcggacggatttgggacagtttaaatggagcgaaattttcgtcccaaatccgt 12431624  T
Q  360 cccaaaatcgtgtgaaatatttatgacatgttcaaacaaggnnnnnnnncccacaaatttcgcacggatttccttnnnnnnn-caaatccgtcccaaatc 458  Q
    |||||||||||||||||||||||||||||||||||||||||        ||||||||||||||| ||||||||||        |||||||||||||||||    
T  12431625 cccaaaatcgtgtgaaatatttatgacatgttcaaacaaggttttttttcccacaaatttcgcatggatttccttaaaaaaaacaaatccgtcccaaatc 12431724  T
Q  459 cgtgtgaaatattgagacggatttcgaacggataataatttgaaggttttaattttatttctaatttgtgcacatttcaaataccgtcccaaatctgtgt 558  Q
    | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12431725 catgtgaaatattgagacggatttcggacggataataatttgaaggttttaattttatttctaatttgtgcacatttcaaataccgtcccaaatctgtct 12431824  T
Q  559 gaaatattgggacggatttcagatggaatacgagatgtagcttattatttttatttccgtgtattccgtcccaaatccgtgtgaaagtttgagacaaatt 658  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12431825 gaaatattgagacggatttcagatggaatacgagatgtagcttattatttttatttacgtgtattccgtcccaaatccgtgtgaaagtttgagacaaatt 12431924  T
Q  659 ttagaccatatttaacatatttttatttccgtgaattccgtcccaaatctatgggaaactattgagacagatttcagataaagtaatttatttatatata 758  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||  | |||||||||||||||||||||    
T  12431925 ttagaccatatttaacatatttttatttccgtgaattccgtcccaaattcgtgggaaactattgagacagatttctaacaaagtaatttatttatatata 12432024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 756 - 814
Target Start/End: Original strand, 12432787 - 12432845
Alignment:
Q  756 ataatagaatagttgtgaaagataaaccctaatgtgttaatcttgtgtgcctccttcat 814  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12432787 ataatagaatagttgtgaaagataaaccctaatgtgttaatcttgtgtgcctccttcat 12432845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 2e-51; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 257 - 490
Target Start/End: Original strand, 39286126 - 39286357
Alignment:
Q  257 cagtgttttcagacggaattttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagagaaattttcatcccaaatc 356  Q
    ||||| |||| ||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||| |||| |||||||  |||||||| |||||||||    
T  39286126 cagtgatttcggacggaattttcggacggatacgattttgtctgaatttttcggacgaatttgggacggttttaacggagcaaaattttcgtcccaaatc 39286225  T
Q  357 cgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggnnnnnnnncccacaaatttcgcacggatttccttnnnnnnncaaatccgtcccaaa 456  Q
    ||||||||||||||||||||  ||||| |||||||||||||  |        ||||| ||||||||||| ||||||||       |||||||||||||||    
T  39286226 cgtcccaaaatcgtgtgaaaattttataacatgttcaaacattg--ttttttcccacgaatttcgcacgaatttccttaaaaaaacaaatccgtcccaaa 39286323  T
Q  457 tccgtgtgaaatattgagacggatttcgaacgga 490  Q
     |||||||||| |||||||||||||||| |||||    
T  39286324 accgtgtgaaacattgagacggatttcggacgga 39286357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 268 - 354
Target Start/End: Original strand, 5212568 - 5212654
Alignment:
Q  268 gacggaattttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagagaaattttcatcccaaa 354  Q
    |||| |||||||||||||||||| ||||||| ||||| || ||||||||||| ||| |||| ||||||| ||||||||| |||||||    
T  5212568 gacgaaattttcggacggatacgattttgtcagaattttttggacggatttgagacggttttaacggagcgaaattttcgtcccaaa 5212654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 8777796 - 8777689
Alignment:
Q  20 tctagcaggtaactaatctaacaagaaagcttcttctgatatgaggaatttcattgtcttaaagaaatttggtgttagcctgcatcccccaaatgctact 119  Q
    |||||||||||||| | ||| ||||||||||  | |||||||||| || |||||||| |||||||| |||| ||||||  | ||||| ||||||||  ||    
T  8777796 tctagcaggtaacttaactagcaagaaagctcatactgatatgagaaacttcattgttttaaagaagtttgatgttagtattcatcctccaaatgcccct 8777697  T
Q  120 aaaattat 127  Q
    ||||||||    
T  8777696 aaaattat 8777689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 257 - 354
Target Start/End: Complemental strand, 17219010 - 17218913
Alignment:
Q  257 cagtgttttcagacggaattttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagagaaattttcatcccaaa 354  Q
    |||||||||| ||||||||||||| ||| |  | | |||||||||||| ||||||| ||||||||||| ||| || ||||  |||||||| |||||||    
T  17219010 cagtgttttctgacggaattttcgaacgaaagcttatttgtctgaatttttcggacagatttgggacaattttaaaggagcaaaattttcttcccaaa 17218913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 358 - 483
Target Start/End: Original strand, 13937196 - 13937319
Alignment:
Q  358 gtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggnnnnnnnncccacaaatttcgcacggatttccttnnnnnnncaaatccgtcccaaat 457  Q
    |||||||||||||||||||  ||||| |||||||||||||  |        ||||| ||||||||||| ||||||||       |||||||||||||||     
T  13937196 gtcccaaaatcgtgtgaaaattttataacatgttcaaacattgtttttt--cccacgaatttcgcacgaatttccttaaaaaaacaaatccgtcccaaaa 13937293  T
Q  458 ccgtgtgaaatattgagacggatttc 483  Q
    |||| ||||| |||||||||||||||    
T  13937294 ccgtatgaaacattgagacggatttc 13937319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 449 - 518
Target Start/End: Complemental strand, 17218833 - 17218765
Alignment:
Q  449 gtcccaaatccgtgtgaaatattgagacggatttcgaacggataataatttgaaggttttaattttattt 518  Q
    ||||||||||||||||| || ||||||||||||||  |||  |||| |||||| ||||||||||||||||    
T  17218833 gtcccaaatccgtgtgatattttgagacggatttcagacgactaat-atttgagggttttaattttattt 17218765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 259 - 351
Target Start/End: Original strand, 9987035 - 9987127
Alignment:
Q  259 gtgttttcagacggaattttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagagaaattttcatccc 351  Q
    |||||||  ||||||||||| |||||||  | | | |||||||||| ||||||||||||| |||| |||| || |||| ||||||||| ||||    
T  9987035 gtgttttgggacggaattttgggacggaagcttatctgtctgaatttttcggacggatttaggacggttttaaaggagcgaaattttcgtccc 9987127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 276 - 314
Target Start/End: Original strand, 13937136 - 13937174
Alignment:
Q  276 tttcggacggatacgtttttgtctgaattgttcggacgg 314  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  13937136 tttcggacggatacgattttgtctgaatttttcggacgg 13937174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 1e-49; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 261 - 478
Target Start/End: Complemental strand, 8516002 - 8515786
Alignment:
Q  261 gttttcagacggaattttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagagaaattttcatcccaaatccgtc 360  Q
    |||||| ||||||||||||||||||||   |||||||||||||| |||||||||||||| ||| ||||  | |||| | |||||||||||||||||||||    
T  8516002 gttttcggacggaattttcggacggatgaatttttgtctgaatttttcggacggatttgagacggtttgtaaggagcgtaattttcatcccaaatccgtc 8515903  T
Q  361 ccaaaatcgtgtgaaatatttatgacatgttcaaacaaggnnnnnnnncccacaaatttcgcacggatttccttnnnnnnncaaatccgtcccaaatccg 460  Q
    ||||||||||||||| | ||||||||||||||||| ||||        ||||| ||||||||||||||||| ||       |||||||||||||||||||    
T  8515902 ccaaaatcgtgtgaactttttatgacatgttcaaa-aaggttttttttcccacgaatttcgcacggatttcgttaaaaatacaaatccgtcccaaatccg 8515804  T
Q  461 tgtgaaatattgagacgg 478  Q
    ||||||||||||||||||    
T  8515803 tgtgaaatattgagacgg 8515786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 261 - 489
Target Start/End: Complemental strand, 18749260 - 18749034
Alignment:
Q  261 gttttcagacggaattttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagagaaattttcatcccaaatccgtc 360  Q
    |||||| ||||||||||||||||||||||  ||||||||||||| |||||||||||||||||| ||||  |||||| ||||||| | |||||||||||||    
T  18749260 gttttcggacggaattttcggacggatacaattttgtctgaatttttcggacggatttgggacggttttcacggagcgaaatttccgtcccaaatccgtc 18749161  T
Q  361 ccaaaatcgtgtgaaatatttatgacatgttcaaacaaggnnnnnnnncccacaaatttcgcacggatttccttnnnnnnncaaatccgtcccaaatccg 460  Q
    ||||||||||||||||  |  |||||||||||||||| ||        ||||| ||||||||| ||||||| ||       ||| ||||||||||| |||    
T  18749160 ccaaaatcgtgtgaaaattgcatgacatgttcaaacaggg--ttttttcccacgaatttcgcatggatttcttttaaaaaacaattccgtcccaaaaccg 18749063  T
Q  461 tgtgaaatattgagacggatttcgaacgg 489  Q
    |||||||||||||||||||||||| ||||    
T  18749062 tgtgaaatattgagacggatttcggacgg 18749034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 261 - 489
Target Start/End: Complemental strand, 2302831 - 2302605
Alignment:
Q  261 gttttcagacggaattttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagagaaattttcatcccaaatccgtc 360  Q
    |||||| ||||||||||||||||||||  ||||||||||||||| ||||||| |||||||||| ||||  | |||| | ||||||| |||||||||||||    
T  2302831 gttttcggacggaattttcggacggatgtgtttttgtctgaatttttcggacagatttgggacggtttgtaaggagcgtaattttcgtcccaaatccgtc 2302732  T
Q  361 ccaaaatcgtgtgaaatatttatgacatgttcaaacaaggnnnnnnnncccacaaatttcgcacggatttccttnnnnnnncaaatccgtcccaaatccg 460  Q
    | ||||||||||||||  ||||||||||||||||| ||||        ||||| ||||||||||||||||| ||       ||||| |||||||||||||    
T  2302731 ctaaaatcgtgtgaaagttttatgacatgttcaaa-aagg-tttttttcccacgaatttcgcacggatttcattaaaaaaacaaattcgtcccaaatccg 2302634  T
Q  461 tgtgaaatattgagacggatttcgaacgg 489  Q
    |||||||||||||||||| ||||| ||||    
T  2302633 tgtgaaatattgagacggttttcggacgg 2302605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 489
Target Start/End: Original strand, 30230607 - 30230739
Alignment:
Q  355 tccgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggnnnnnnnncccacaaatttcgcacggatttccttnnnnnnncaaatccgtccca 454  Q
    ||||||||||| ||||||||||  || |||||||||||||||||||        ||||| ||||||||||  | ||| ||       |||||||||||||    
T  30230607 tccgtcccaaattcgtgtgaaaatttcatgacatgttcaaacaaggtttttt--cccacgaatttcgcacataattctttaaaaaaacaaatccgtccca 30230704  T
Q  455 aatccgtgtgaaatattgagacggatttcgaacgg 489  Q
     || |||||||||||||||||||||||||| ||||    
T  30230705 gattcgtgtgaaatattgagacggatttcggacgg 30230739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 263 - 375
Target Start/End: Original strand, 9575109 - 9575220
Alignment:
Q  263 tttcagacggaattttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagagaaattttcatcccaaatccgtccc 362  Q
    |||| ||||||||||| ||||||||| ||||| || | |||| ||| ||| |||||| ||||||||  |  ||| |||| |||| ||||||||| || ||    
T  9575109 tttcggacggaatttttggacggataagttttcgttttaatttttcagacagatttgagacagttttta-agagtgaaaatttcgtcccaaatctgttcc 9575207  T
Q  363 aaaatcgtgtgaa 375  Q
    |||||||||||||    
T  9575208 aaaatcgtgtgaa 9575220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 1e-49; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 646 - 814
Target Start/End: Complemental strand, 23002689 - 23002521
Alignment:
Q  646 tttgagacaaattttagaccatatttaacatatttttatttccgtgaattccgtcccaaatctatgggaaactattgagacagatttcagataaagtaat 745  Q
    |||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||  |||||||| ||||| ||| ||| |||  ||||||||    
T  23002689 tttgggacaaattttagaccatatttaacctagttttatttccgtgaattccgtcccaaatccgtgggaaacgattgaaacaaattccagtcaaagtaat 23002590  T
Q  746 ttatttatatataatagaatagttgtgaaagataaaccctaatgtgttaatcttgtgtgcctccttcat 814  Q
    |||||| ||||||||||| ||||||| |||||| |||||||||||||||||||||||  ||||||||||    
T  23002589 ttatttctatataatagagtagttgttaaagatgaaccctaatgtgttaatcttgtgctcctccttcat 23002521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 41 - 220
Target Start/End: Original strand, 17986158 - 17986337
Alignment:
Q  41 caagaaagcttcttctgatatgaggaatttcattgtcttaaagaaatttggtgttagcctgcatcccccaaatgctactaaaattattgaggtagtgtcg 140  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||  ||||||||||||||||  |||||||||||||||| |||| |    
T  17986158 caagaaagcttcttctgacatgagaaattttattgtcttaaagaaatttggtgtcagtttgcatcccccaaatgcccctaaaattattgaggttgtgtgg 17986257  T
Q  141 aatacaccaatcttcagttggagcaaatgtaattgagatggctcatctactaacaataattcagcttgtggagggatttt 220  Q
    ||  | |||||||| | |||||  ||||| ||   ||||||||||||||| |||||| ||||||||||||||||||||||    
T  17986258 aaccctccaatctttaattggataaaatgcaacacagatggctcatctacaaacaatcattcagcttgtggagggatttt 17986337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 262 - 483
Target Start/End: Original strand, 31139842 - 31140050
Alignment:
Q  262 ttttcagacggaattttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagagaaattttcatcccaaatccgtcc 361  Q
    ||||| |||||||||||| |||||||||| |||||||||| || || ||||||||||||||| |||| ||||||| ||||||||           |||||    
T  31139842 ttttcggacggaattttcagacggatacgattttgtctgatttttttggacggatttgggacggttttaacggagcgaaatttt-----------cgtcc 31139930  T
Q  362 caaaatcgtgtgaaatatttatgacatgttcaaacaaggnnnnnnnncccacaaatttcgcacggatttccttnnnnnnncaaatccgtcccaaatccgt 461  Q
    ||||||||||||||| |||||||||||||||||||| ||        ||||| ||||||||||| ||||||||       ||||||||| ||||| ||||    
T  31139931 caaaatcgtgtgaaaaatttatgacatgttcaaacatgg--ttttttcccacgaatttcgcacgaatttccttaaaaaaacaaatccgttccaaaaccgt 31140028  T
Q  462 gtgaaatattgagacggatttc 483  Q
    |||||| |||||||||||||||    
T  31140029 gtgaaacattgagacggatttc 31140050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 644
Target Start/End: Complemental strand, 23002656 - 23002619
Alignment:
Q  607 ttttatttccgtgtattccgtcccaaatccgtgtgaaa 644  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  23002656 ttttatttccgtgaattccgtcccaaatccgtgggaaa 23002619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 1e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 275 - 489
Target Start/End: Original strand, 30774691 - 30774903
Alignment:
Q  275 ttttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagagaaattttcatcccaaatccgtcccaaaatcgtgtga 374  Q
    |||||||||||||  ||||||||||||||| |||||||||||||||||| ||||  | |||| | ||||||| |||||||||||||||||||||||||||    
T  30774691 ttttcggacggatgtgtttttgtctgaatttttcggacggatttgggacggtttgtaaggagcgtaattttcgtcccaaatccgtcccaaaatcgtgtga 30774790  T
Q  375 aatatttatgacatgttcaaacaaggnnnnnnnncccacaaatttcgcacggatttccttnnnnnnncaaatccgtcccaaatccgtgtgaaatattgag 474  Q
    ||| ||||||||||||||||  || |        ||||| ||||||||||||||||| ||       ||||| |||||||||||||||||||||||||||    
T  30774791 aatttttatgacatgttcaa--aaagctttttttcccacgaatttcgcacggatttcattaaaaaaacaaattcgtcccaaatccgtgtgaaatattgag 30774888  T
Q  475 acggatttcgaacgg 489  Q
    |||| ||||| ||||    
T  30774889 acggttttcggacgg 30774903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 268 - 489
Target Start/End: Original strand, 23246211 - 23246430
Alignment:
Q  268 gacggaattttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagagaaattttcatcccaaatccgtcccaaaat 367  Q
    |||| ||||||||||| |||||  ||||||||||||| ||||||||||||||||||||||| ||| ||| | ||||| | ||||||||||||||||||||    
T  23246211 gacgaaattttcggacagatacaattttgtctgaatttttcggacggatttgggacagttttaacagagcgtaatttccgtcccaaatccgtcccaaaat 23246310  T
Q  368 cgtgtgaaatatttatgacatgttcaaacaaggnnnnnnnncccacaaatttcgcacggatttccttnnnnnnncaaatccgtcccaaatccgtgtgaaa 467  Q
    |||||||||  |  |||||||||||||||| ||        ||||| |||||||||| |||||| ||       ||| ||||||| ||| ||||||||||    
T  23246311 cgtgtgaaaattgcatgacatgttcaaacaggg--ttttttcccacgaatttcgcacagatttctttaaaaaaacaattccgtcctaaaaccgtgtgaaa 23246408  T
Q  468 tattgagacggatttcgaacgg 489  Q
    ||||||||||||||||| ||||    
T  23246409 tattgagacggatttcggacgg 23246430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 42 - 220
Target Start/End: Complemental strand, 20749479 - 20749301
Alignment:
Q  42 aagaaagcttcttctgatatgaggaatttcattgtcttaaagaaatttggtgttagcctgcatcccccaaatgctactaaaattattgaggtagtgtcga 141  Q
    ||||||||||||||||| ||||| || ||||||||||||||||| |||||||| ||  | || ||| |||||||  ||||||||||| |||| |||| ||    
T  20749479 aagaaagcttcttctgacatgagaaacttcattgtcttaaagaagtttggtgtcagtttacaccccgcaaatgcccctaaaattattaaggttgtgtgga 20749380  T
Q  142 atacaccaatcttcagttggagcaaatgtaattgagatggctcatctactaacaataattcagcttgtggagggatttt 220  Q
    || | |||||||||| |||||  || || |||  ||||||||||||||  |||||| ||||| ||||||||||||||||    
T  20749379 atcctccaatcttcaattggataaagtgcaatacagatggctcatctaaaaacaatcattcaacttgtggagggatttt 20749301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 1e-37; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 257 - 397
Target Start/End: Complemental strand, 35795055 - 35794915
Alignment:
Q  257 cagtgttttcagacggaattttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagagaaattttcatcccaaatc 356  Q
    |||||||||| ||||| ||||||| ||||||||  ||||||||||||| ||||| ||||||||||||||||| ||||||| | ||||||| |||||||||    
T  35795055 cagtgttttcggacgggattttcgaacggatacaattttgtctgaatttttcggtcggatttgggacagttttaacggagcggaattttcgtcccaaatc 35794956  T
Q  357 cgtcccaaaatcgtgtgaaatatttatgacatgttcaaaca 397  Q
    |||| |||||||||||||||| ||  |||||||||||||||    
T  35794955 cgtctcaaaatcgtgtgaaattttcgtgacatgttcaaaca 35794915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 269 - 400
Target Start/End: Complemental strand, 1643292 - 1643162
Alignment:
Q  269 acggaattttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagagaaattttcatcccaaatccgtcccaaaatc 368  Q
    |||||||||| |||||||  | | ||||| |||||| |||||| ||||||||||||| || || |||| ||||||||  ||||||||||||||||||||     
T  1643292 acggaattttgggacggaagcttatttgtttgaatttttcggatggatttgggacagatttaaaggagcgaaattttggtcccaaatccgtcccaaaat- 1643194  T
Q  369 gtgtgaaatatttatgacatgttcaaacaagg 400  Q
    ||| ||||| |||||||||| |||||||||||    
T  1643193 gtgcgaaatttttatgacatattcaaacaagg 1643162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 343 - 490
Target Start/End: Original strand, 21803613 - 21803758
Alignment:
Q  343 tttcatcccaaatccgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggnnnnnnnncccacaaatttcgcacggatttccttnnnnnnnc 442  Q
    |||| ||||||||||||||||||||||| |||||| ||||| |||| |||||||||||        ||||  ||||||||||| ||||||||       |    
T  21803613 tttcgtcccaaatccgtcccaaaatcgtatgaaatttttataacatattcaaacaagg--aattttcccatgaatttcgcacgaatttccttaaaaaaac 21803710  T
Q  443 aaatccgtcccaaatccgtgtgaaatattgagacggatttcgaacgga 490  Q
    |||||||||||||| ||||||||||| |||||| |||||||| |||||    
T  21803711 aaatccgtcccaaaaccgtgtgaaattttgagatggatttcggacgga 21803758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 343 - 490
Target Start/End: Original strand, 21723876 - 21724021
Alignment:
Q  343 tttcatcccaaatccgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggnnnnnnnncccacaaatttcgcacggatttccttnnnnnnnc 442  Q
    |||| |||||||||||| |||||||||| |||||| ||||| |||| |||||||||||        ||||  ||||||||||| ||||||||       |    
T  21723876 tttcgtcccaaatccgttccaaaatcgtatgaaatttttataacatattcaaacaaggaatttt--cccatgaatttcgcacgaatttccttaaaaaaac 21723973  T
Q  443 aaatccgtcccaaatccgtgtgaaatattgagacggatttcgaacgga 490  Q
    |||||||||||||| ||||||||||| |||||| |||||||| |||||    
T  21723974 aaatccgtcccaaaaccgtgtgaaattttgagatggatttcggacgga 21724021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 338 - 398
Target Start/End: Complemental strand, 19589850 - 19589790
Alignment:
Q  338 gaaattttcatcccaaatccgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaa 398  Q
    ||||||||| || ||||||||||||||||||||||||||  |||||||||||||| |||||    
T  19589850 gaaattttcgtctcaaatccgtcccaaaatcgtgtgaaacttttatgacatgttccaacaa 19589790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 2e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 259 - 365
Target Start/End: Original strand, 14330332 - 14330438
Alignment:
Q  259 gtgttttcagacggaattttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagagaaattttcatcccaaatccg 358  Q
    |||||||| ||||||||||| |||||||  | | |||||||||||| |||||||||||||||||| |||| || |||| ||||||||| |||||||||||    
T  14330332 gtgttttcggacggaattttgggacggaagcttatttgtctgaatttttcggacggatttgggacggttttaaaggagcgaaattttcgtcccaaatccg 14330431  T
Q  359 tcccaaa 365  Q
    |||||||    
T  14330432 tcccaaa 14330438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 261 - 489
Target Start/End: Original strand, 24251022 - 24251237
Alignment:
Q  261 gttttcagacggaattttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagagaaattttcatcccaaatccgtc 360  Q
    |||||| ||||||||||||||||||||||  ||||||||||||| || ||||||||||||||| |||| ||| ||| ||||||           ||||||    
T  24251022 gttttcggacggaattttcggacggatacaattttgtctgaattttttggacggatttgggacggttttaacagagcgaaatt-----------tccgtc 24251110  T
Q  361 ccaaaatcgtgtgaaatatttatgacatgttcaaacaaggnnnnnnnncccacaaatttcgcacggatttccttnnnnnnncaaatccgtcccaaatccg 460  Q
    ||||||||||||||||  |  |||||||||||||||| ||        ||||  |||||||||| |||||| ||       ||| || |||||||| |||    
T  24251111 ccaaaatcgtgtgaaaattgcatgacatgttcaaacatgg--tcttttcccatgaatttcgcacagatttctttaaaaaaacaattctgtcccaaaaccg 24251208  T
Q  461 tgtgaaatattgagacggatttcgaacgg 489  Q
    |||||||||||||||||||||||| ||||    
T  24251209 tgtgaaatattgagacggatttcggacgg 24251237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 409 - 490
Target Start/End: Original strand, 14330469 - 14330550
Alignment:
Q  409 cccacaaatttcgcacggatttccttnnnnnnncaaatccgtcccaaatccgtgtgaaatattgagacggatttcgaacgga 490  Q
    ||||| ||||||||||| ||||||||       |||||| |||||||| ||||||||||| |||||| |||||||| |||||    
T  14330469 cccacgaatttcgcacgaatttccttaaaaaaacaaatctgtcccaaaaccgtgtgaaattttgagatggatttcggacgga 14330550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 260 - 518
Target Start/End: Original strand, 6296 - 6543
Alignment:
Q  260 tgttttcagacggaattttcggacggatacgtttttgtctgaattgttcggacggatttgggacagtttaaacggagagaaattttcatcccaaatccgt 359  Q
    |||||||||||||||||||||||||||      |||||||||||| || |||||||||||||||||||| || ||||| ||||||||           ||    
T  6296 tgttttcagacggaattttcggacggaagttgatttgtctgaattttttggacggatttgggacagttttaaaggagaaaaattttc-----------gt 6384  T
Q  360 cccaaaatcgtgtgaaatatttatgacatgttcaaacaaggnnnnnnnncccacaaatttcgcacggatttccttnnnnnnn---caaatccgtcccaaa 456  Q
     |||||||||| |||||| |||||| |||||||||||| ||        || || ||||||||||  ||||||||          |||||| || |||||    
T  6385 tccaaaatcgtctgaaatttttatggcatgttcaaacacggtgtttt--ccaacgaatttcgcacaaatttccttaaaaaaaaaacaaatctgttccaaa 6482  T
Q  457 tccgtgtgaaatattgagacggatttcgaacggataataatttgaaggttttaattttattt 518  Q
    |||||||||||| ||||||||||||||| |||| |||| |||||| ||||||||||||||||    
T  6483 tccgtgtgaaattttgagacggatttcggacggctaat-atttgagggttttaattttattt 6543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University