View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5813_high_14 (Length: 403)
Name: NF5813_high_14
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 28931890 - 28932279
Alignment:
| Q |
1 |
atggcatgtggaaagaagctgaagatgcggcaaagaaggtataataaacatcaaatcaaatcaaagtttatcatcattcaaaatttgtaattaaatttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28931890 |
atggcatgtggaaagaagctgaagatgcggcaaagaaggtataataaacatcaaatcaaatcaaagtttatcatcattcaaaatttgtaattaaatttta |
28931989 |
T |
|
| Q |
101 |
tttgtannnnnnn-ctgaagcactgtagtcttgttggaaaattggataaacaagtttgaggtatacataaagcacaactaatgtgtagaaaagtcttctt |
199 |
Q |
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| T |
28931990 |
tttgtattttttttctgaagcactgtagtcttgttggaaaattggataaacaagtttgaggtatacataaagcacaactaatgtgtagaaaagtcttctt |
28932089 |
T |
|
| Q |
200 |
acatgaacttttattgacgacctattttacgaatcatgaatcgcgtctcattatgaatctcaagatacataatcaataaaaatgtaaca-ttttttaagg |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28932090 |
acatgaacttttattgacgacctattttacgaatcatgaatcgcgtctcattatgaatctcaagatacataatcaataaaaatgtaacatttttttaagg |
28932189 |
T |
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| Q |
299 |
aaaaataagtgacgtaaacactataagttggtatatcgtatataaatctcaaaacaaaatggttgactacattaagttcaggttgtgatt |
388 |
Q |
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| T |
28932190 |
aaaaataagtgacgtaaaaactataagttggtatatcgtatataaatctcaaaacaaaatggttgactacattaagttcaggttgtgatt |
28932279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 10186746 - 10186783
Alignment:
| Q |
7 |
tgtggaaagaagctgaagatgcggcaaagaaggtataa |
44 |
Q |
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| T |
10186746 |
tgtggaaagaagctgaagctgctgcaaagaaggtataa |
10186783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 188 - 349
Target Start/End: Complemental strand, 35122049 - 35121885
Alignment:
| Q |
188 |
aaaagtcttcttacatgaacttttattgacgacctattttacgaatcatgaatcgcgtctcattatgaatctcaagatacataatcaataaaaatgtaac |
287 |
Q |
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||||||||||| |||||| |||||||||| ||| ||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||| | || |
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| T |
35122049 |
aaaagtcttctaacatgaccttttattgaagactgattttccgaatcatgaatcatatctcattatgaatcttaagatacataatcaataaaagtagcac |
35121950 |
T |
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| Q |
288 |
a--ttttttaaggaaaaataagtgac-gtaaacactataagttggtatatcgtatataaatctca |
349 |
Q |
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| T |
35121949 |
agcatttttaagtaaaaataactgacaaaaaaaactataagctgatatatcatatataaatctca |
35121885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 35122259 - 35122173
Alignment:
| Q |
1 |
atggcatgtggaaagaagctgaagatgcggcaaagaaggtataataaacatcaaatcaaatcaaagtttatcatcattcaaaatttgtaatt |
92 |
Q |
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||||| |||||||||||||||||| ||| |||||||||||||| |||| ||||||||||||| ||||||||| |||||||| |||||| |
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| T |
35122259 |
atggcgtgtggaaagaagctgaagctgctgcaaagaaggtatagtaaa-----aatcaaatcaaaggttatcatcactcaaaattggtaatt |
35122173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 35122146 - 35122082
Alignment:
| Q |
114 |
ctgaagcactgtagtcttgttggaaaattg---gataaacaagtttgaggtatacataaagcaca |
175 |
Q |
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||||||||||||||||||| ||| |||||| |||||||| |||||||||||| | |||||||| |
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| T |
35122146 |
ctgaagcactgtagtcttgatgggaaattgctagataaacatgtttgaggtataaacaaagcaca |
35122082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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