View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5813_high_21 (Length: 342)
Name: NF5813_high_21
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 9 - 326
Target Start/End: Complemental strand, 34318343 - 34318026
Alignment:
| Q |
9 |
ataatactctgacatctctatattctgcatgtcaaagttcatatcatagtattcaccttgtaacaagaacaaatttaagtcctcgtccaaaggtgttgaa |
108 |
Q |
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| T |
34318343 |
ataatactctgacatctctatattctgcatgtcaaagttcatatcatagtattcaccttgtaacaagaacaaatttaagtcctcgtccaaaggtgttgaa |
34318244 |
T |
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| Q |
109 |
gctgactcaatacccaaaagtaagtttctttggtagatttccatatcagaagcgcagccaagattaaattttggtgtttttaaactcaaatttgaagtga |
208 |
Q |
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| T |
34318243 |
gctgactcaatacccaaaagtaagtttctttggtagatttccatatcagaagcgcagccaagattaaattttggtgtttttaaactcaaatttgaagtga |
34318144 |
T |
|
| Q |
209 |
aaatgatatcgcttttggactgactaggaaaggtatcaactgaagacaccgttgaattcacaggtctaatgtaatcacttttgtaactggagggattgga |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34318143 |
aaatgatatcgcttttggactgactaggaaaggtatcaactgaagacaccgttgaattcacaggtctaatgtaatcacttttgtaaccggagggattgga |
34318044 |
T |
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| Q |
309 |
attaattgatagtgatcg |
326 |
Q |
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|||||||||||||||||| |
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| T |
34318043 |
attaattgatagtgatcg |
34318026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 26376159 - 26376061
Alignment:
| Q |
219 |
gcttttggactgactaggaaaggtatcaactgaagacaccgttgaattcacaggtctaatgtaatcacttttgtaactggagggattggaattaattga |
317 |
Q |
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|||||||||| |||||| |||||||||| ||||||||| | |||||||||||| |||||||||||||| |||||| |||||||| ||||||||||| |
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| T |
26376159 |
gcttttggacggactagaaaaggtatcatctgaagacatcattgaattcacagaactaatgtaatcactgttgtaatgagagggattagaattaattga |
26376061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 218 - 316
Target Start/End: Complemental strand, 35680779 - 35680681
Alignment:
| Q |
218 |
cgcttttggactgactaggaaaggtatcaactgaagacaccgttgaattcacaggtctaatgtaatcacttttgtaactggagggattggaattaattg |
316 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||| ||||||||||| | |||| |||||||| |||||| |||||||||||||||||||| |
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| T |
35680779 |
cgcttttggactgactaggaaaggtatcaactgatgacaccattgaattcacaagattaatctaatcactgttgtaatgggagggattggaattaattg |
35680681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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