View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5813_high_22 (Length: 328)
Name: NF5813_high_22
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 21903266 - 21902965
Alignment:
| Q |
11 |
taattctattggtggttcatcggtaaatctcttgtcgtttgattcctaagaagaagaagaaaaatgaataacaatgaaagacacacaaaccaatgttgtc |
110 |
Q |
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| T |
21903266 |
taattctgttggtggttcatcggtaaatctcttgtcgtttgattcctaagaagaagaagaaaaatgaataacaacggaagagacacaaaccaatgttgtc |
21903167 |
T |
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| Q |
111 |
aaacagcgacgctatatcatttatagcgtagccgaatttgaacaaataataaatattttacgatatgcattaggaatttgtagaagatgatgttgtacac |
210 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21903166 |
aaacagcgacgctatatcatttatagtgtagccgaatttgaacaaacaataaatattttacgatatgcattaggaatttgtagaagatgatgttgtacac |
21903067 |
T |
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| Q |
211 |
gatccacagatgacaaacatgagaaacttcaattaataaacatgctctcaatgaattaccaagggatatactttgatatttcggaagacacctctttctc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21903066 |
gatccacagatgacaaacatgagaaacttcaattaataaacatgctctcaatgaattaccaagggatatactttgatatttcggaagacacctctttctc |
21902967 |
T |
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| Q |
311 |
ct |
312 |
Q |
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|| |
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| T |
21902966 |
ct |
21902965 |
T |
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