View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5813_high_25 (Length: 308)
Name: NF5813_high_25
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 41805470 - 41805724
Alignment:
| Q |
13 |
gcaaaggcaagaaagggggaa-tcagagaagatgaatgtgacaacaattgttgttgaacttaagaagtgagttgaagagctagagaagttgatggaagag |
111 |
Q |
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| T |
41805470 |
gcaaaggcaagaaagggggaaatcagagaagatgaatgtgacaacaattgttgttgaacttaagaagagagttgaagagctagagaagttgatggaagag |
41805569 |
T |
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| Q |
112 |
aaagaggagggtatgttgaacttgggagaggaaaagagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaa |
211 |
Q |
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| T |
41805570 |
aaagaggagggtatgttgaacttgggagaggaaaagagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaa |
41805669 |
T |
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| Q |
212 |
aggaattcatatcaaagactcgccggggccagagagcaatgtgaacccatctata |
266 |
Q |
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| T |
41805670 |
aggaattcatatcaaagactcgccggggccagagagcagtgtgaacccatctata |
41805724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 41799088 - 41799321
Alignment:
| Q |
16 |
aaggcaagaaagggggaatcagagaagatgaatgtgacaacaattgttgttgaacttaagaagtgagttgaagagctagagaagttgatggaagagaaag |
115 |
Q |
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| T |
41799088 |
aaggcaagaaaggaggaatcagagaagatgaatgtgacagcaactgttgttgaacttaagaagacagttggagagctagagaagtcgatgaaagagaaag |
41799187 |
T |
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| Q |
116 |
aggagggtatgttgaacttgggagaggaaaagagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaaagga |
215 |
Q |
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| T |
41799188 |
aggaaggcatattggatttgggagaggaaaagagggaggccatcaggcagctctgtttgtggattgattatcaccgtgagagtagtgaccgtctcaagga |
41799287 |
T |
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| Q |
216 |
attcatatcaaagactcgccggggccagagagca |
249 |
Q |
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| T |
41799288 |
aatcatatcaaagacacgcaggggccagagagca |
41799321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 41812301 - 41812535
Alignment:
| Q |
13 |
gcaaaggcaagaaagggggaatcagagaagatgaatgtgacaacaattgttgttgaacttaagaagtgagttgaagagctagagaagttgatggaagaga |
112 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||| |||||||||| |||||| |
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| T |
41812301 |
gcaaaggcaagaaaggaggaatcagagaagatgaatgtgacagcaactgttgatgaacttaagaagacagttgaagagctacagaagttgataaaagaga |
41812400 |
T |
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| Q |
113 |
aagaggagggtatgttgaacttgggagaggaaaagagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaaa |
212 |
Q |
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| T |
41812401 |
aagaggaaggaatattggatttgggagaggaaaagagggaggccatcaggcagctctgtttgttgattgattatcaccgcgagtgtaatgtctatctcaa |
41812500 |
T |
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| Q |
213 |
ggaattcatatcaaagactcgccggggccagagag |
247 |
Q |
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|| | |||| |||||||||| |||||||||||| |
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| T |
41812501 |
gggaatcatctcaaagactcaaaggggccagagag |
41812535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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