View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5813_high_26 (Length: 305)

Name: NF5813_high_26
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5813_high_26
NF5813_high_26
[»] chr8 (4 HSPs)
chr8 (10-290)||(35338873-35339154)
chr8 (109-284)||(19512060-19512236)
chr8 (151-284)||(10626196-10626330)
chr8 (151-284)||(21117022-21117156)
[»] chr1 (1 HSPs)
chr1 (17-290)||(42599840-42600102)
[»] chr4 (3 HSPs)
chr4 (109-284)||(18368403-18368579)
chr4 (109-284)||(36594344-36594520)
chr4 (151-284)||(1240102-1240236)
[»] chr3 (4 HSPs)
chr3 (151-290)||(21326820-21326960)
chr3 (151-284)||(12835910-12836044)
chr3 (151-284)||(29518538-29518668)
chr3 (151-275)||(5333403-5333524)
[»] chr7 (1 HSPs)
chr7 (230-270)||(45805179-45805219)


Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 35338873 - 35339154
Alignment:
Q  10 gcagagagaagcaaaaaattcaagtaaaagatcgtacatccaagaaagagtctacatcacgtcagatgggagatgcaattgcagcatgggctcaggcatg 109  Q
    |||||| |||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35338873 gcagagggaagcaaaaaattcaactaaaagatcgtacatccgagaaagtgtctacatcacgtcagatgggagatgcaattgcagcatgggctcaggcatg 35338972  T
Q  110 gggtaagattgtggaggctagttcttcacatgtaattacaaattgttctcttactaagtgtgtagttgctcttgaagagataggagacatttcagatgac 209  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35338973 gggtaagattgtggaggctagttcttcacatgtaacaacaaattgttctcttactaagtgtgtagttgctcttgaagagataggagacatttcagatgac 35339072  T
Q  210 atctacgggaaagcctt-gagaagtttaaggatccagattggagggaaatgtttatcgccatgtctactgataggagacgtg 290  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  35339073 atctacgggaaagccttggagaagtttaaggatccagattggagggaaatgtttgtcgccatgtctactgataagagacgtg 35339154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 109 - 284
Target Start/End: Complemental strand, 19512236 - 19512060
Alignment:
Q  109 ggggtaagattgtggaggctagttcttcacatgtaattacaaattgttctcttactaagtgtgtagttgctcttgaagagataggagacatttcagatga 208  Q
    ||||||||||||||||||||||||||||||||||||  | | |||| ||||||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  19512236 ggggtaagattgtggaggctagttcttcacatgtaacaaaagattgctctcttactaagtgtgtggttgctcttgaagagattgaagacatttcagatga 19512137  T
Q  209 catctacgggaaagcctt-gagaagtttaaggatccagattggagggaaatgtttatcgccatgtctactgatagga 284  Q
    |||||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||| |||||||  |||||||    
T  19512136 catctatgggaaagccttggaaaaatttaaggatcctgattggagggaaatgtttatcgctatgtctaaagatagga 19512060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 284
Target Start/End: Complemental strand, 10626330 - 10626196
Alignment:
Q  151 attgttctcttactaagtgtgtagttgctcttgaagagataggagacatttcagatgacatctacgggaaagccttg-agaagtttaaggatccagattg 249  Q
    ||||||||||||| |||||||| | |||||| || |   ||| ||||||||||||||| | ||| || ||||| ||| | |||||||||||| | |||||    
T  10626330 attgttctcttaccaagtgtgtggctgctctcgatggactagaagacatttcagatgatacctatggaaaagctttggaaaagtttaaggattctgattg 10626231  T
Q  250 gagggaaatgtttatcgccatgtctactgatagga 284  Q
    |||| ||||||||||||||||| ||| ||| ||||    
T  10626230 gaggtaaatgtttatcgccatgcctaatgagagga 10626196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 284
Target Start/End: Complemental strand, 21117156 - 21117022
Alignment:
Q  151 attgttctcttactaagtgtgtagttgctcttgaagagataggagacatttcagatgacatctacgggaaagccttg-agaagtttaaggatccagattg 249  Q
    ||||||||||||| |||||||| | |||||| || |   ||| ||||||||||||||| | ||| |  ||||| ||| | |||||||||||| | |||||    
T  21117156 attgttctcttaccaagtgtgtggctgctctcgatggactagaagacatttcagatgatacctatgaaaaagctttggaaaagtttaaggattctgattg 21117057  T
Q  250 gagggaaatgtttatcgccatgtctactgatagga 284  Q
    |||||||||||||||||||||| ||| ||| ||||    
T  21117056 gagggaaatgtttatcgccatgcctaatgagagga 21117022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 42600102 - 42599840
Alignment:
Q  17 gaagcaaaaaattcaagtaaaagatcgtacatccaagaaagagtctacatcacgtcagatgggagatgcaattgcagcatgggctcaggcatggggtaag 116  Q
    ||||||||||  |||||||||||||| |||||||| |||||||||||||||  ||| |||||| ||||||       ||||  ||   |||| |||||||    
T  42600102 gaagcaaaaacatcaagtaaaagatcatacatccatgaaagagtctacatcgggtcggatgggcgatgca-------catg--ct---gcatcgggtaag 42600015  T
Q  117 attgtggaggctagttcttcacatgtaattacaaattgttctcttactaagtgtgtagttgctcttgaagagataggagacatttcagatgacatctacg 216  Q
    ||||||||||||| ||||||||||| ||  | | ||||||||||||| ||||||||  |||||||||||||||||| |||||||||||||||||||| ||    
T  42600014 attgtggaggctacttcttcacatggaacaatagattgttctcttacaaagtgtgtgattgctcttgaagagatagaagacatttcagatgacatcttcg 42599915  T
Q  217 ggaaagcctt-gagaagtttaaggatccagattggagggaaatgtttatcgccatgtctactgataggagacgtg 290  Q
    | |||||||| || |||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||    
T  42599914 gaaaagccttggaaaagtttaaggatcctgattggagggaaatgtttatggccatgtctaatgataggagacgtg 42599840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 8e-55; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 109 - 284
Target Start/End: Original strand, 18368403 - 18368579
Alignment:
Q  109 ggggtaagattgtggaggctagttcttcacatgtaattacaaattgttctcttactaagtgtgtagttgctcttgaagagataggagacatttcagatga 208  Q
    ||||||||||||||||||||||||||||||||||||  | | |||| ||||||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  18368403 ggggtaagattgtggaggctagttcttcacatgtaacaaaagattgctctcttactaagtgtgtggttgctcttgaagagattgaagacatttcagatga 18368502  T
Q  209 catctacgggaaagcctt-gagaagtttaaggatccagattggagggaaatgtttatcgccatgtctactgatagga 284  Q
    |||||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||| |||||||  |||||||    
T  18368503 catctatgggaaagccttggaaaaatttaaggatcctgattggagggaaatgtttatcgctatgtctaaagatagga 18368579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 109 - 284
Target Start/End: Complemental strand, 36594520 - 36594344
Alignment:
Q  109 ggggtaagattgtggaggctagttcttcacatgtaattacaaattgttctcttactaagtgtgtagttgctcttgaagagataggagacatttcagatga 208  Q
    ||||||||||||||||||||||||||||||||||||  | | |||| ||||||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  36594520 ggggtaagattgtggaggctagttcttcacatgtaacaaaagattgctctcttactaagtgtgtggttgctcttgaagagattgaagacatttcagatga 36594421  T
Q  209 catctacgggaaagcctt-gagaagtttaaggatccagattggagggaaatgtttatcgccatgtctactgatagga 284  Q
    |||||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||| |||||||  |||||||    
T  36594420 catctatgggaaagccttggaaaaatttaaggatcctgattggagggaaatgtttatcgctatgtctaaagatagga 36594344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 151 - 284
Target Start/End: Complemental strand, 1240236 - 1240102
Alignment:
Q  151 attgttctcttactaagtgtgtagttgctcttgaagagataggagacatttcagatgacatctacgggaaagccttg-agaagtttaaggatccagattg 249  Q
    ||||||||||||| |||||||| | |||||| || |   ||| ||||||||||||||| | ||| || ||||| ||| | |||||||||||| | |||||    
T  1240236 attgttctcttaccaagtgtgtggctgctctcgatggactagaagacatttcagatgatacctatggaaaagctttggaaaagtttaaggattctgattg 1240137  T
Q  250 gagggaaatgtttatcgccatgtctactgatagga 284  Q
    |||||||||||||||||||||| ||| ||| ||||    
T  1240136 gagggaaatgtttatcgccatgcctaatgagagga 1240102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 151 - 290
Target Start/End: Complemental strand, 21326960 - 21326820
Alignment:
Q  151 attgttctcttactaagtgtgtagttgctcttgaagagataggagacatttcagatgacatctacgggaaagccttgaga-agtttaaggatccagattg 249  Q
    |||||||| |||| |||||||| | ||||||||||||||||| |||||||||| ||||||| || | ||||||||||| | ||||||||||||| |||||    
T  21326960 attgttctattaccaagtgtgttgctgctcttgaagagatagaagacatttcaaatgacatttatgtgaaagccttgaaagagtttaaggatcctgattg 21326861  T
Q  250 gagggaaatgtttatcgccatgtctactgataggagacgtg 290  Q
    ||| ||||||||||||| |||||| | |||| |||||||||    
T  21326860 gagagaaatgtttatcgtcatgtcgaatgatcggagacgtg 21326820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 151 - 284
Target Start/End: Original strand, 12835910 - 12836044
Alignment:
Q  151 attgttctcttactaagtgtgtagttgctcttgaagagataggagacatttcagatgacatctacgggaaagccttg-agaagtttaaggatccagattg 249  Q
    ||||||||||||| |||||||| | |||||| || |   ||| ||||||||||||||| | ||| || ||||| ||| | |||||||||||| | |||||    
T  12835910 attgttctcttaccaagtgtgtggctgctctcgatggactagaagacatttcagatgatacctatggaaaagctttggaaaagtttaaggattctgattg 12836009  T
Q  250 gagggaaatgtttatcgccatgtctactgatagga 284  Q
    |||||||||||||||||||||| ||| ||| ||||    
T  12836010 gagggaaatgtttatcgccatgcctaatgagagga 12836044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 151 - 284
Target Start/End: Complemental strand, 29518668 - 29518538
Alignment:
Q  151 attgttctcttactaagtgtgtagttgctcttgaagagataggagacatttcagatgacatctacgggaaagccttg-agaagtttaaggatccagattg 249  Q
    ||||||||||||| |||||||| | |||||| || ||  ||| |||||||||||||||    || || ||||||||| | |||||||||||||    |||    
T  29518668 attgttctcttaccaagtgtgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttg 29518573  T
Q  250 gagggaaatgtttatcgccatgtctactgatagga 284  Q
    |||||||||||||||||||||||||| ||| ||||    
T  29518572 gagggaaatgtttatcgccatgtctaatgagagga 29518538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 275
Target Start/End: Original strand, 5333403 - 5333524
Alignment:
Q  151 attgttctcttactaagtgtgtagttgctcttgaagagataggagacatttcagatgacatctacgggaaagccttg-agaagtttaaggatccagattg 249  Q
    ||||||||||||| |||||||| | |||||| || ||  ||| |||||||||||||||    || || ||||||||| | |||||||||||||    |||    
T  5333403 attgttctcttaccaagtgtgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttg 5333498  T
Q  250 gagggaaatgtttatcgccatgtcta 275  Q
    ||||||||||||||||||||||||||    
T  5333499 gagggaaatgtttatcgccatgtcta 5333524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 45805219 - 45805179
Alignment:
Q  230 aagtttaaggatccagattggagggaaatgtttatcgccat 270  Q
    |||||||||||||| |||||||||||||||||||| |||||    
T  45805219 aagtttaaggatcctgattggagggaaatgtttatggccat 45805179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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