View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5813_high_30 (Length: 272)
Name: NF5813_high_30
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 1601527 - 1601771
Alignment:
| Q |
18 |
tcaaaatcctttgaaattcttcaagcaaagcttcatgctatcaaaaacttttattggctaaggagctgaactaccatgaggtgatttgcactacaaactc |
117 |
Q |
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| T |
1601527 |
tcaaaatcctttgaaattcttcaagcaaagcttcatgctatcaaaaacttttattggctaagcagctgaactaccatgaggtgatttgcactacaaactc |
1601626 |
T |
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| Q |
118 |
tgtttagtgtgttgacatcctccatgttcaaacttcaatattccacaaatttgctacttttatctaaaatgtcaaagatcttcttaatcaagatcacggc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1601627 |
tgtttagtgtgttgacatcctccatgttcaaacttcaatattccacaaatttgctacttttatctaaaatgtcaaagatcttcttaatcaagatcagggc |
1601726 |
T |
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| Q |
218 |
cgttccttgtcatgcctcaattatttatagggatatgagtataat |
262 |
Q |
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| T |
1601727 |
cgttccttgtcatgcctcaattatttatagggatatgagtataat |
1601771 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 262
Target Start/End: Complemental strand, 55229854 - 55229824
Alignment:
| Q |
232 |
cctcaattatttatagggatatgagtataat |
262 |
Q |
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| T |
55229854 |
cctcaattatttatagggatatgagtataat |
55229824 |
T |
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