View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5813_high_35 (Length: 251)
Name: NF5813_high_35
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813_high_35 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 54571949 - 54572186
Alignment:
| Q |
3 |
aagcagcagttgacagaatatggaaccgtaggtttcaaaaattggaggagggaagttatttgttatctccaaaatggagactctggaaaacgcttatcaa |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
54571949 |
aagcagcagttgacagaatatggaaccgtaggtttcaaaaattggaggagggaagttatttgttaactccaaaatggagactctggaaaacgcttatcaa |
54572048 |
T |
|
| Q |
103 |
tgattcccttgttgattcacaaaccatgctcagacttgcttcattgtctaataccagaaagaaagccattaaagaggttcaacgctttttggtggatgct |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54572049 |
tgattcccttgttgattcacaaaccatgctcagacttgcttcattgtctaataccagaaagaaagccattaaagaggttcaacgctttttggtggatgct |
54572148 |
T |
|
| Q |
203 |
cggaatagccttgttggcccttcctttctttactctgt |
240 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
54572149 |
cggaataaccttgttggcccttcctttctccactctgt |
54572186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 55155216 - 55155453
Alignment:
| Q |
3 |
aagcagcagttgacagaatatggaaccgtaggtttcaaaaattggaggagggaagttatttgttatctccaaaatggagactctggaaaacgcttatcaa |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
55155216 |
aagcagcagttgacagaatatggaaccgtaggtttcaaaaattggaggagggaagttatttgttaactccaaaatggagactctggaaaacgcttatcaa |
55155315 |
T |
|
| Q |
103 |
tgattcccttgttgattcacaaaccatgctcagacttgcttcattgtctaataccagaaagaaagccattaaagaggttcaacgctttttggtggatgct |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55155316 |
tgattcccttgttgattcacaaaccatgctcagacttgcttcattgtctaataccagaaagaaagccattaaagaggttcaacgctttttggtggatgct |
55155415 |
T |
|
| Q |
203 |
cggaatagccttgttggcccttcctttctttactctgt |
240 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
55155416 |
cggaataaccttgttggcccttcctttctccactctgt |
55155453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University