View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5813_high_6 (Length: 492)
Name: NF5813_high_6
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 122 - 483
Target Start/End: Original strand, 6133605 - 6133966
Alignment:
| Q |
122 |
tatattgcttctctttgactcttaccttcatgaactgatcatcatattagaatggaatcaacacctgattttgtgaaaagggtgcttagagaagcgcttg |
221 |
Q |
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| T |
6133605 |
tatattgcttctctttgactcttaccttcatgaactgatcatcatattagaatggaatcaacacctgattttgtgaaaagggtgcttagagaagcgcttg |
6133704 |
T |
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| Q |
222 |
gtgatgacgttagcgatttcaaactactggtatttgcagttcatgcttttattcttgaatcagggtttattcgtgtggatcgcgtttcgggtgtgaagat |
321 |
Q |
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| T |
6133705 |
gtgatgacgttagcgatttcaaactactggtatttgcagttcatgcttttattcttgaatcagggtttattcgtgtggatcgcgtttcgggtgtgaagat |
6133804 |
T |
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| Q |
322 |
tagttcctctcatcttattgatgacatgtcttcttcttcagtgatatgtttgaggtatactcttcctgagattcttactaatggttcacctcattcattg |
421 |
Q |
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| T |
6133805 |
tagttcctctcatcttatagatgacatgtcttcttcttcaatgatatgtttgaggtatactcttcctgagattcttactaatggttcacctcattcattg |
6133904 |
T |
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| Q |
422 |
aatttgaaaattcagacattagggcattttgtgaatgtttatggttcattgtatgatgatgt |
483 |
Q |
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| T |
6133905 |
aatttgaaaattcagacattagggcattttgtgaacgtttatggttcattgtatgatgatgt |
6133966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 6133518 - 6133548
Alignment:
| Q |
17 |
aacaccaactcacactcagaatcaacaccat |
47 |
Q |
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| T |
6133518 |
aacaccaactcacactcagaatcaacaccat |
6133548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 140 - 483
Target Start/End: Original strand, 20599803 - 20600146
Alignment:
| Q |
140 |
ctcttaccttcatgaactgatcatcatattagaatggaatcaacacctgattttgtgaaaagggtgcttagagaagcgcttggtgatgacgttagcgatt |
239 |
Q |
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| T |
20599803 |
ctcttaccatcatcaaccgatcattatattagaatggaatcaacacctaattttgtgaaaagggtgcttagagaagcacttggcgacgacgttagcgatt |
20599902 |
T |
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| Q |
240 |
tcaaactactggtatttgcagttcatgcttttattcttgaatcagggtttattcgtgtggatcgcgtttcgggtgtgaagattagttcctctcatcttat |
339 |
Q |
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| T |
20599903 |
tcaaactactggtatttgctgttcatgcttttattcttgaatcagggtttgttcgtgtggatcacgtttcaggtatggctatcagtatctctcatcttat |
20600002 |
T |
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| Q |
340 |
tgatgacatgtcttcttcttcagtgatatgtttgaggtatactcttcctgagattcttactaatggttcacctcattcattgaatttgaaaattcagaca |
439 |
Q |
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| T |
20600003 |
tgatgacatgtcttcttcttcaatgatatccttgaggtatactcttcctgagattcttactaatggttcatctcattctttgaatttgaaaattcagaca |
20600102 |
T |
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| Q |
440 |
ttagggcattttgtgaatgtttatggttcattgtatgatgatgt |
483 |
Q |
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| T |
20600103 |
ttagggcattttgtgaatgtttatggttcattgtatgatgatgt |
20600146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 353 - 482
Target Start/End: Complemental strand, 47944862 - 47944733
Alignment:
| Q |
353 |
tcttcttcagtgatatgtttgaggtatactcttcctgagattcttactaatggttcacctcattcattgaatttgaaaattcagacattagggcattttg |
452 |
Q |
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| T |
47944862 |
tcttcatcaatgatatctttgaggtatactcttcctgagattcttaccaatggttcatctcatgctgtgatattgaaaattcagactttagggaattttg |
47944763 |
T |
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| Q |
453 |
tgaatgtttatggttcattgtatgatgatg |
482 |
Q |
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| T |
47944762 |
tgaatgtctatggttcattgtgtgatgatg |
47944733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 184 - 360
Target Start/End: Complemental strand, 47945064 - 47944888
Alignment:
| Q |
184 |
acctgattttgtgaaaagggtgcttagagaagcgcttggtgatgacgttagcgatttcaaactactggtatttgcagttcatgcttttattcttgaatca |
283 |
Q |
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| T |
47945064 |
acctgatttcgtgaagagggttattaaggaagcgcttggtgatgatgttagtgatttgaagctgttggtgtttgcggttcatgctgttattcttgaatct |
47944965 |
T |
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| Q |
284 |
gggtttattcgtgtggatcgcgtttcgggtgtgaagattagttcctctcatcttattgatgacatgtcttcttcttc |
360 |
Q |
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| T |
47944964 |
gggtttgttcgtgtggacgaggtttcgggtatggcgattagttgctctaatcttgttgatgatatgtcttcttcttc |
47944888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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