View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5813_low_11 (Length: 425)
Name: NF5813_low_11
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 34273806 - 34273600
Alignment:
| Q |
20 |
atcgaatgtatttgtagttgaatagattggaagatagtggataattgaatgcgatatttattaatctttggagtaagtagctagcttactaatagtaatt |
119 |
Q |
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| T |
34273806 |
atcgaatgtatttgtagttgaatagattggaagatagtggataattgaatgcgatatttattaatttttggagtaagtagctatcttactaatagtaatt |
34273707 |
T |
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| Q |
120 |
gcatttgggtgggagttttccatcatgcatatcctctccagcccaagaaactctgcaacctccgccaactcaaggccccaacttttccataatgagttaa |
219 |
Q |
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| T |
34273706 |
gcatttgggtgggagttttccatcatgcatatcctctccagcccaagaaactctgcaacctccgccaactcaaggccccaacttttccataatgagttaa |
34273607 |
T |
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| Q |
220 |
taaaaag |
226 |
Q |
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| T |
34273606 |
taaaaag |
34273600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 285 - 395
Target Start/End: Complemental strand, 34273541 - 34273431
Alignment:
| Q |
285 |
cattaagtgatataagttgatttattataaattcaacaactccatatgcattagggattacttaggtttttattacttgttgcgcttacttataacataa |
384 |
Q |
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| T |
34273541 |
cattaagtgatataagttgatttattataaattcaacaactccatatgcattagggattacttaggtttttattacttgttgcgcttacttataacataa |
34273442 |
T |
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| Q |
385 |
aatcatcaaca |
395 |
Q |
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| T |
34273441 |
aatcatcaaca |
34273431 |
T |
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