View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5813_low_13 (Length: 406)
Name: NF5813_low_13
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 44851838 - 44851472
Alignment:
| Q |
19 |
aatagaaagatgccaaatttaaaaactacctgaaattgatatgtgggatgtttgtagcatgcgatatatgaacaatacattttgttacattcttctagac |
118 |
Q |
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| T |
44851838 |
aatagaaagatgccaaatttaaaaactacctgaaattgatatgtgggatgtttgtagcatgcgatatatgaacaatacattttgttacattcttctagac |
44851739 |
T |
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| Q |
119 |
aacagacacatnnnnnnnnnncacttgaatcaatcaagaaggggcaacaggaatcctttcatcagaaaaaatgctcctcgtaaagtgtaaaatagatgaa |
218 |
Q |
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| T |
44851738 |
aacagacacataaaaaa----------aatcaatcaagaaggggcaacaggaatcctttcatcagaaaaaatgctcctcgtaaagtgtaaaatagatgaa |
44851649 |
T |
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| Q |
219 |
gacataggtaactcctcaagctcatcgaaaaaatcaaattcttctgatttagatgctgacatattctttaactgtgcatagcagagtggctcttcctcta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44851648 |
gacataggtaactcctcaagctcatcgaaaaaatcaaattcttctgatttagatgctgacatattctttaactgtgcatagcagagtggctcttcctcta |
44851549 |
T |
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| Q |
319 |
agagaagatctattttgtcaatatggcttttttctatatttagtttgaaaggatcttcttggtctatgatgatgtcc |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44851548 |
agagaagatctattttgtcaatatggcttttttctatatttagtttgaaaggatcttcttggtctataatgatgtcc |
44851472 |
T |
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