View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5813_low_15 (Length: 398)

Name: NF5813_low_15
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5813_low_15
NF5813_low_15
[»] scaffold0022 (4 HSPs)
scaffold0022 (289-351)||(43383-43445)
scaffold0022 (289-351)||(77103-77165)
scaffold0022 (334-380)||(43463-43509)
scaffold0022 (334-380)||(77183-77229)
[»] chr5 (1 HSPs)
chr5 (294-361)||(8962271-8962338)
[»] chr8 (2 HSPs)
chr8 (295-351)||(27325694-27325750)
chr8 (289-352)||(42024656-42024719)
[»] chr1 (2 HSPs)
chr1 (295-353)||(16305493-16305551)
chr1 (296-352)||(41404950-41405006)
[»] chr3 (1 HSPs)
chr3 (294-359)||(44714146-44714211)
[»] chr2 (2 HSPs)
chr2 (295-351)||(38022420-38022476)
chr2 (295-331)||(44247175-44247211)


Alignment Details
Target: scaffold0022 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 289 - 351
Target Start/End: Original strand, 43383 - 43445
Alignment:
Q  289 aactcaaggctttgtttggatatcttaaaactaacggaacggagcggagcggaacggaatgga 351  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  43383 aacttaaggctttgtttggatatcttaaaactaacgaaacggagcggagcggaatggaatgga 43445  T

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Target: scaffold0022; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 289 - 351
Target Start/End: Original strand, 77103 - 77165
Alignment:
Q  289 aactcaaggctttgtttggatatcttaaaactaacggaacggagcggagcggaacggaatgga 351  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  77103 aacttaaggctttgtttggatatcttaaaactaacgaaacggagcggagcggaatggaatgga 77165  T

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Target: scaffold0022; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 380
Target Start/End: Original strand, 43463 - 43509
Alignment:
Q  334 ggagcggaacggaatggaacagaatgaatgttccattcgattgtttg 380  Q
    ||||||||||||||||||||  || ||||||||||||| ||||||||    
T  43463 ggagcggaacggaatggaacgaaacgaatgttccattccattgtttg 43509  T

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Target: scaffold0022; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 380
Target Start/End: Original strand, 77183 - 77229
Alignment:
Q  334 ggagcggaacggaatggaacagaatgaatgttccattcgattgtttg 380  Q
    ||||||||||||||||||||  || ||||||||||||| ||||||||    
T  77183 ggagcggaacggaatggaacgaaacgaatgttccattccattgtttg 77229  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 361
Target Start/End: Complemental strand, 8962338 - 8962271
Alignment:
Q  294 aaggctttgtttggatatcttaaaactaacggaacggagcggagcggaacggaatggaacagaatgaa 361  Q
    |||||| ||||||||||| ||||||| || |||| |||||||||||||| |||||||| ||| |||||    
T  8962338 aaggctatgtttggatattttaaaacgaatggaatggagcggagcggaatggaatggagcaggatgaa 8962271  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 351
Target Start/End: Complemental strand, 27325750 - 27325694
Alignment:
Q  295 aggctttgtttggatatcttaaaactaacggaacggagcggagcggaacggaatgga 351  Q
    ||||| ||||||||||| ||||||| || |||| |||||||||||||| ||||||||    
T  27325750 aggctatgtttggatattttaaaacgaatggaatggagcggagcggaatggaatgga 27325694  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 352
Target Start/End: Original strand, 42024656 - 42024719
Alignment:
Q  289 aactcaaggctttgtttggatatcttaaaactaacggaacggagcggagcggaacggaatggaa 352  Q
    |||| |||||| ||||||||||  ||||||| |||||||||||||||| ||||| |||| ||||    
T  42024656 aacttaaggctctgtttggataagttaaaaccaacggaacggagcggaacggaatggaacggaa 42024719  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 353
Target Start/End: Original strand, 16305493 - 16305551
Alignment:
Q  295 aggctttgtttggatatcttaaaactaacggaacggagcggagcggaacggaatggaac 353  Q
    ||||| ||||||||||| ||||||| ||||||| ||| |||||||| | ||||||||||    
T  16305493 aggctatgtttggatattttaaaacgaacggaatggaacggagcgggatggaatggaac 16305551  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 41405006 - 41404950
Alignment:
Q  296 ggctttgtttggatatcttaaaactaacggaacggagcggagcggaacggaatggaa 352  Q
    |||| |||||||||| ||||||||||||||| ||||  ||| |||||||| ||||||    
T  41405006 ggctctgtttggataacttaaaactaacggagcggaatggaacggaacgggatggaa 41404950  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 44714211 - 44714146
Alignment:
Q  294 aaggctttgtttggatatcttaaaactaacggaacggagcggagcggaacggaatggaacagaatg 359  Q
    |||||| |||||||||| |||| || ||||||| ||||| ||| | ||||||||||||||| ||||    
T  44714211 aaggctctgtttggataacttacaagtaacggagcggagtggaacagaacggaatggaacataatg 44714146  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 351
Target Start/End: Original strand, 38022420 - 38022476
Alignment:
Q  295 aggctttgtttggatatcttaaaactaacggaacggagcggagcggaacggaatgga 351  Q
    ||||| ||||||||||| ||||||| || |||| ||||||||||||||  |||||||    
T  38022420 aggctatgtttggatattttaaaacgaatggaatggagcggagcggaatagaatgga 38022476  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 44247211 - 44247175
Alignment:
Q  295 aggctttgtttggatatcttaaaactaacggaacgga 331  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  44247211 aggctttgtttggataacttaaaactaacggagcgga 44247175  T

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