View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5813_low_18 (Length: 360)
Name: NF5813_low_18
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 24105015 - 24105345
Alignment:
| Q |
18 |
tttatgatatgaatgttggagttgaaaatgatgataaattgttggagtagttgtggttgatagctctctagcaacgcatgtgtctgcgactaatatgaca |
117 |
Q |
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| T |
24105015 |
tttatgatatgaatgttggagttgaaaatgatgataaattgttggagtagttgtggttgatagctctctagcaacgcatgtgtctgcgactaatatgaca |
24105114 |
T |
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| Q |
118 |
ctgagatatgtgattacattcaattaatttattttaaaaattttcacatataagagtgtcacgtccgtgtctgtgctttatagattgataatagagttat |
217 |
Q |
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| T |
24105115 |
ctgagatatgtgattacattcaattaatttatttttaaaattttcacatataagagtttcacgtccatgtctgtgctttatagattgataatagagttat |
24105214 |
T |
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| Q |
218 |
agttgtgattgatagctccttagcaacacttgatggaatgtgggtctggtgtccgacatgtgtctgggaggaccaacacgacactgacacatctgattat |
317 |
Q |
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| T |
24105215 |
agttgtgattgatagctccttagcaacacttgatggaacgtgggtctggtgtctgacatgtgtctg---ggaccaacatgacactgacacatttgattat |
24105311 |
T |
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| Q |
318 |
attcaattaattcaggttttgcaaattttcatct |
351 |
Q |
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| T |
24105312 |
attcaattaattcaggttttgcaaatttttatct |
24105345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 24105739 - 24105775
Alignment:
| Q |
31 |
tgttggagttgaaaatgatgataaattgttggagtag |
67 |
Q |
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| T |
24105739 |
tgttggagttgaaaatgatgataaattgttggagtag |
24105775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 326
Target Start/End: Complemental strand, 602707 - 602671
Alignment:
| Q |
290 |
ccaacacgacactgacacatctgattatattcaatta |
326 |
Q |
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| T |
602707 |
ccaacacgacactgacacatgtgattatattgaatta |
602671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 38957343 - 38957381
Alignment:
| Q |
114 |
gacactgagatatgtgattacattcaattaatttatttt |
152 |
Q |
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| T |
38957343 |
gacactgacacatgtgattacattcaattaatttatttt |
38957381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 10926633 - 10926670
Alignment:
| Q |
114 |
gacactgagatatgtgattacattcaattaatttattt |
151 |
Q |
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| T |
10926633 |
gacactgagatatgtgattacatttaattaattcattt |
10926670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 32102859 - 32102899
Alignment:
| Q |
112 |
atgacactgagatatgtgattacattcaattaatttatttt |
152 |
Q |
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| T |
32102859 |
atgacactgacaaatgtgattatattcaattaatttatttt |
32102899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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