View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5813_low_21 (Length: 346)
Name: NF5813_low_21
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813_low_21 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0172 (1 HSPs) |
| | |
|
| [»] scaffold0655 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 3509607 - 3509942
Alignment:
| Q |
1 |
aatatttatattttgattagaacccttatccaaacccttcagccttgattgttaaaatgttagttagttttggtattaagaatcagtggtgaattatttt |
100 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3509607 |
aatattcatattttgattagattccttagccaaacccttcagccttgaatgttaaaatgttagttagttttggtattaagaattagtggtgaattatttt |
3509706 |
T |
|
| Q |
101 |
gtgaaggtatagacgtagtggaacaaagaatgcttcatgggaattttaagagttcttgttgcaaaggtaagggcatcactccatacgcttccttatgtgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |||||| |
|
|
| T |
3509707 |
gtgaaggtatagacgtagtggaacaaagaatgcttcatgggaattttaagagttcttggtgcaaaggtaagggcatcattccatgcgcttccgtatgtgt |
3509806 |
T |
|
| Q |
201 |
atctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgctatgtgctatatattggtgatgtgataattatcttggtgg |
300 |
Q |
| |
|
|| ||||| ||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3509807 |
atgtgtga--atatttgtgttgtgatggttaccatagtgttgttgttttgaagtgaatgctatgtgctatatattggtgatgtgataattaccttggtgt |
3509904 |
T |
|
| Q |
301 |
tgttgttttggcatgaatattatgtgtattatttctgtg |
339 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
3509905 |
tgttgttttggcatgaatattatgt-tattatttatgtg |
3509942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 164 - 334
Target Start/End: Original strand, 24540576 - 24540746
Alignment:
| Q |
164 |
aaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgctat |
263 |
Q |
| |
|
|||||||||| ||||||||| |||||||| || || || ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
24540576 |
aaggtaagggtatcactccacacgcttccgtacgtttatgtgtgaatatatttgtgttgtgatgattatcatattgttgttgttttgaagtgaatgctat |
24540675 |
T |
|
| Q |
264 |
gtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt |
334 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24540676 |
gttttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt |
24540746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 204 - 309
Target Start/End: Original strand, 15277855 - 15277960
Alignment:
| Q |
204 |
tgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgctatgtgctatatattggtgatgtgataattatcttggtggtgt |
303 |
Q |
| |
|
|||| ||||||||||||| |||| |||| |||| | ||||||||| ||| | ||||||||||| |||||||||||| | ||||||||||||||||||||| |
|
|
| T |
15277855 |
tgtgtatatatttgtgttttgataattaacataatattgttgtttggaaatgaatgctatgtgttatatattggtggtatgataattatcttggtggtgt |
15277954 |
T |
|
| Q |
304 |
tgtttt |
309 |
Q |
| |
|
|||||| |
|
|
| T |
15277955 |
tgtttt |
15277960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 8910139 - 8910183
Alignment:
| Q |
281 |
tgtgataattatcttggtggtgttgttttggcatgaatattatgt |
325 |
Q |
| |
|
|||||||| |||||| |||| |||||||||||||||||| ||||| |
|
|
| T |
8910139 |
tgtgataagtatctttgtggggttgttttggcatgaatactatgt |
8910183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 10137 - 10469
Alignment:
| Q |
1 |
aatatttatattttgattagaacccttatccaaacccttcagccttgattgttaaaatgttagttagttttggtattaagaatcagtggtgaattatttt |
100 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10137 |
aatattcatattttgattagattccttagccaaaccct---gccttgaatgttaaaatgttagttagttttggtattaagaattagtggtgaattatttt |
10233 |
T |
|
| Q |
101 |
gtgaaggtatagacgtagtggaacaaagaatgcttcatgggaattttaagagttcttgttgcaaaggtaagggcatcactccatacgcttccttatgtgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| || ||| |
|
|
| T |
10234 |
gtgaaggtatagacgtagtggaacaaagaatgtttcatgggaattttaagagttcttgttgcaaaggtaagggcatcactccacgcacgtccgtacgtgt |
10333 |
T |
|
| Q |
201 |
atctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgctatgtgctatatattggtgatgtgataattatcttggtgg |
300 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10334 |
atgtgtga--ctatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctatgtgttatatattggtgatgtgataattatcttggtgg |
10431 |
T |
|
| Q |
301 |
tgttgttttggcatgaatattatgtgtattatttctgtg |
339 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
10432 |
tgttgttttggcatgaatattatgt-tattatttttgtg |
10469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 16421425 - 16421757
Alignment:
| Q |
1 |
aatatttatattttgattagaacccttatccaaacccttcagccttgattgttaaaatgttagttagttttggtattaagaatcagtggtgaattatttt |
100 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16421425 |
aatattcatattttgattagattccttagccaaaccct---gccttgaatgttaaaatgttagttagttttggtattaagaattagtggtgaattatttt |
16421521 |
T |
|
| Q |
101 |
gtgaaggtatagacgtagtggaacaaagaatgcttcatgggaattttaagagttcttgttgcaaaggtaagggcatcactccatacgcttccttatgtgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| || ||| |
|
|
| T |
16421522 |
gtgaaggtatagacgtagtggaacaaagaatgtttcatgggaattttaagagttcttgttgcaaaggtaagggcatcactccacgcacgtccgtacgtgt |
16421621 |
T |
|
| Q |
201 |
atctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgctatgtgctatatattggtgatgtgataattatcttggtgg |
300 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16421622 |
atgtgtga--ctatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctatgtgttatatattggtgatgtgataattatcttggtgg |
16421719 |
T |
|
| Q |
301 |
tgttgttttggcatgaatattatgtgtattatttctgtg |
339 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
16421720 |
tgttgttttggcatgaatattatgt-tattatttttgtg |
16421757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 156 - 339
Target Start/End: Complemental strand, 21268354 - 21268171
Alignment:
| Q |
156 |
ttgttgcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagta |
255 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||| || ||| || |||| |||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
21268354 |
ttgttgcaaaggtaagggcatcacttcacgcgcttccgtacgtgtatgtgtgtatatatttgtgttgtgatgattattatagtgttgttgttttgaaatg |
21268255 |
T |
|
| Q |
256 |
aatgctatgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattatttctgtg |
339 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| |||| |
|
|
| T |
21268254 |
agtgctatgtgctatatattggtgatgtgataattatcttggtgatgttgtttttgcatgaatattatgggtattatttatgtg |
21268171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 25 - 339
Target Start/End: Original strand, 28392746 - 28393055
Alignment:
| Q |
25 |
cttatccaaacccttcagccttgattgttaaaatgttagttagttttggtattaagaatcagtggtgaattattttgtgaaggtatagacgtagtggaac |
124 |
Q |
| |
|
|||| ||| |||| ||||||| || ||||||| || | ||||||||||| ||||||| | ||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
28392746 |
cttagccatacccatcagcctagaatgttaaagtggtggttagttttggcattaagacttagtggtggattattttgtgaaggtagagacgtagtggaac |
28392845 |
T |
|
| Q |
125 |
aaagaatgcttcatgggaattttaagagttcttgttgcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtg |
224 |
Q |
| |
|
|||||| |||||||||||||||||| |||| ||||| |||| ||| ||||||||||| || ||| | |||| | || |||||||||| || || |
|
|
| T |
28392846 |
aaagaa-gcttcatgggaattttaaaagtttctgttgtgaaggcaagagcatcactccacgcgtttcggtgtgtg----tatgtatatatttgttttttg |
28392940 |
T |
|
| Q |
225 |
atgattatcatagtgttgttgttttgaagtaaatgctatgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatg |
324 |
Q |
| |
|
|| ||||| ||| ||||||||||||||| | |||| |||||| |||||||||||| |||| ||||| |||||||| ||||||||||| |||||||||||| |
|
|
| T |
28392941 |
ataattattataatgttgttgttttgaaatgaatgttatgtgttatatattggtggtgtggtaattctcttggtgttgttgttttggtatgaatattatg |
28393040 |
T |
|
| Q |
325 |
tgtattatttctgtg |
339 |
Q |
| |
|
|||||| ||| |||| |
|
|
| T |
28393041 |
tgtattctttttgtg |
28393055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 25 - 334
Target Start/End: Original strand, 28383870 - 28384174
Alignment:
| Q |
25 |
cttatccaaacccttcagccttgattgttaaaatgttagttagttttggtattaagaatcagtggtgaattattttgtgaaggtatagacgtagtggaac |
124 |
Q |
| |
|
|||| ||||| || ||||||| || ||||||| || | ||||||||||| ||||||| | ||||||| ||||||||||||| ||| |||||||||||||| |
|
|
| T |
28383870 |
cttagccaaatccatcagcctagaatgttaaagtggtggttagttttggcattaagacttagtggtggattattttgtgaacgtagagacgtagtggaac |
28383969 |
T |
|
| Q |
125 |
aaagaatgcttcatgggaattttaagagttcttgttgcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtg |
224 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| |||||||| | ||||||||| | ||| || ||| | || |||||| |||||| || |
|
|
| T |
28383970 |
aaagaatgcttcatgggaattttaaaagtttccattgtgaaggtaagagtatcactccacgcatttcggtacgtg----tatgtatatatctgtgttttg |
28384065 |
T |
|
| Q |
225 |
atgattatcatagtgttgttgttttgaagtaaatgctatgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatg |
324 |
Q |
| |
|
|| ||||||||| ||||||||||||||| | |||| |||||| |||||||| ||| |||| |||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
28384066 |
ataattatcataatgttgttgttttgaaatgaatgttatgtgttatatattcgtggtgtggtaatta-cttggtggtgttgttttggcatgaacattatg |
28384164 |
T |
|
| Q |
325 |
tgtattattt |
334 |
Q |
| |
|
|||||||||| |
|
|
| T |
28384165 |
tgtattattt |
28384174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 156 - 294
Target Start/End: Complemental strand, 48187508 - 48187370
Alignment:
| Q |
156 |
ttgttgcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagta |
255 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||| || ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48187508 |
ttgttgtaaaggtaagggcatcactccacgcgcttccatacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtg |
48187409 |
T |
|
| Q |
256 |
aatgctatgtgctatatattggtgatgtgataattatct |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48187408 |
aatgctatgtgctatatattggtgatgtgataattatct |
48187370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 77 - 301
Target Start/End: Original strand, 36017792 - 36018017
Alignment:
| Q |
77 |
taagaatcagtggtgaattattttgtgaaggtatagacgtagtggaacaaagaatgcttcatgggaattttaagagttcttgttgcaaaggtaagggcat |
176 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||| |||||||| | |||| ||||| || ||||||||||||| || |||||||||||||||||| |
|
|
| T |
36017792 |
taagaattagtggtgaattattttgcgaaggtatagacatagtggaaaagagaactcttcagggaaattttaagagttgttattgcaaaggtaagggcat |
36017891 |
T |
|
| Q |
177 |
cactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatg-ctatgtgctatatatt |
275 |
Q |
| |
|
||||||| |||||| || ||| || |||| ||||| |||||||||||| ||||||||| || |||||||||||| | |||| |||||| |||||||| |
|
|
| T |
36017892 |
cactccacgtgcttccgtacgtgtatatgtgtatataattgtgttgtgataattatcatattggtgttgttttgaaatgaatgattatgtgttatatatt |
36017991 |
T |
|
| Q |
276 |
ggtgatgtgataattatcttggtggt |
301 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
36017992 |
ggtgttgtgataattatcttggtggt |
36018017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 164 - 339
Target Start/End: Complemental strand, 11283522 - 11283346
Alignment:
| Q |
164 |
aaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatg-cta |
262 |
Q |
| |
|
|||||||||||||||||||| ||||||| || ||| || |||| |||| |||||||||||| ||||||||| || |||||||| ||| | |||| || |
|
|
| T |
11283522 |
aaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtgtataattgtgttgtgataattatcataatgatgttgtttagaaatgaatgatta |
11283423 |
T |
|
| Q |
263 |
tgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtg-tattatttctgtg |
339 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||| ||| ||||| |||||||||||||| |||||||| |||| |
|
|
| T |
11283422 |
tgtgttatatattggtgttgtgataattatcttggtggt-ttgctttggtatgaatattatgtgttattatttgtgtg |
11283346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 159 - 339
Target Start/End: Complemental strand, 12528861 - 12528680
Alignment:
| Q |
159 |
ttgcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaat |
258 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| || ||| || |||| ||||| ||||||| |||| ||| ||||| || |||||||||||| | ||| |
|
|
| T |
12528861 |
ttgcaaaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtatataattgtgttatgataattgtcataatggtgttgttttgaaatgaat |
12528762 |
T |
|
| Q |
259 |
g-ctatgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtg-tattatttctgtg |
339 |
Q |
| |
|
| |||||| |||||| || || ||||||||||||||||||||| ||| ||| | |||||||||||||| |||||||| |||| |
|
|
| T |
12528761 |
gattatgtgttatataatgatgttgtgataattatcttggtggt-ttgcttttgtatgaatattatgtgttattatttgtgtg |
12528680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 286 - 339
Target Start/End: Complemental strand, 48186667 - 48186614
Alignment:
| Q |
286 |
taattatcttggtggtgttgttttggcatgaatattatgtgtattatttctgtg |
339 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48186667 |
taattatcttggtgttgttgttttggcatgaatattatgtgtattatttttgtg |
48186614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 16483965 - 16484042
Alignment:
| Q |
156 |
ttgttgcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatc |
233 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||| || ||| || |||| |||||||||||||||||| |||||| |
|
|
| T |
16483965 |
ttgttgcgaaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtatatatttgtgttgtgataattatc |
16484042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 16484017 - 16484069
Alignment:
| Q |
268 |
tatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatat |
320 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
16484017 |
tatatatttgtgttgtgataattatcttggtggttttgtttcggcatgaatat |
16484069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 28393053 - 28393090
Alignment:
| Q |
297 |
gtggtgttgttttggcatgaatattatgtgtattattt |
334 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
28393053 |
gtggtggtgttttggcatgaacattatgtgtattattt |
28393090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 5537389 - 5537050
Alignment:
| Q |
1 |
aatatttatattttgattagaacccttatccaaacccttcagccttgattgttaaaatgttagttagttttggtattaagaatcagtggtgaattatttt |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5537389 |
aatattcatattttgattagaacccttagccaaacccttcagccttgaatgttaaaatgttagttagttttggtattaagaattagtggtgaattatttt |
5537290 |
T |
|
| Q |
101 |
gtgaaggtatagacgtagtggaacaaagaatgcttcatgggaattttaagagttcttgttgcaaaggtaagggcatcactccatacgcttccttatgtgc |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| || ||| |
|
|
| T |
5537289 |
gcgaaggtatagacgtagtggaacaaagaatgattcctgggaattttaagagttcttgttgcaaaggtaacagcatcactccacgcgcttccgtacgtgt |
5537190 |
T |
|
| Q |
201 |
atctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatg-ctatgtgctatatattggtgatgtgataattatcttggtg |
299 |
Q |
| |
|
|| |||| ||||| |||||| ||||| ||||||||| || |||||||||||| | |||| |||||| |||||| ||||| ||||||||||||||||||| |
|
|
| T |
5537189 |
atatgtgtatataattgtgtagtgataattatcataatggtgttgttttgaaatgaatgattatgtgttatatagtggtgttgtgataattatcttggtg |
5537090 |
T |
|
| Q |
300 |
gtgttgttttggcatgaatattatgtg-tattatttctgtg |
339 |
Q |
| |
|
|| ||| ||||| |||||||||||||| |||||||| |||| |
|
|
| T |
5537089 |
gt-ttgctttggtatgaatattatgtgttattatttgtgtg |
5537050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 163 - 339
Target Start/End: Original strand, 44668815 - 44668990
Alignment:
| Q |
163 |
aaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgcta |
262 |
Q |
| |
|
||||||||||||||||||| | ||||||| || ||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| || |
|
|
| T |
44668815 |
aaaggtaagggcatcactctacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttt-gaagtgaatgtta |
44668913 |
T |
|
| Q |
263 |
tgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattatttctgtg |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44668914 |
tgtgctatatattggtgatgtgataattatcttggtgttgttgttttggcatgaatattatgtgtattatttatgtg |
44668990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 209 - 339
Target Start/End: Complemental strand, 3897390 - 3897258
Alignment:
| Q |
209 |
atatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatg-ctatgtgctatatattggtgatgtgataattatcttggtggtgttgtt |
307 |
Q |
| |
|
||||| |||||||||||| ||||| | ||| |||||||||||| | |||| ||||||| || ||||| ||| |||||||||||| |||||||||||||| |
|
|
| T |
3897390 |
atataattgtgttgtgataattattttggtggtgttgttttgaaatgaatgactatgtgttacatatttgtgttgtgataattattttggtggtgttgtt |
3897291 |
T |
|
| Q |
308 |
ttggcatgaatattatgtg-tattatttctgtg |
339 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||| |
|
|
| T |
3897290 |
ttggcatgaatatcatgtgttattatttgtgtg |
3897258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 316
Target Start/End: Original strand, 6818486 - 6818647
Alignment:
| Q |
157 |
tgttgcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttg-ttttgaagta |
255 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||| || ||| || | || |||||||||| ||||||| |||||||||||| ||||| ||||||| | |
|
|
| T |
6818486 |
tgttgtaaaggtaagggcatcactccacgcgcttatgtacgtgtatatttgtatatatttgtattgtgataattatcatagtggtgttgtttttgaaatg |
6818585 |
T |
|
| Q |
256 |
aatgctatgtgctatatattggtgatgtgataattat-cttggtggtgttgttttggcatga |
316 |
Q |
| |
|
|||| ||| || ||||| ||| || |||||||||||| |||||||| |||| ||||||||| |
|
|
| T |
6818586 |
aatgttatctgttatatgttgttgttgtgataattatatttggtggttttgtcttggcatga |
6818647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 99 - 339
Target Start/End: Original strand, 18901833 - 18902073
Alignment:
| Q |
99 |
ttgtgaaggtatagacgtagtggaacaaagaatgcttcatgggaattttaagagttcttgttgcaaaggtaagggcatcactccatacgcttccttatgt |
198 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | | |||| || |||||||| ||||||||||||||||| |||| |||| ||||||| || || |
|
|
| T |
18901833 |
ttgtgaaggtatagaggtagtggaacaaagacgggtgtatggaaacggtaagagttactgttgcaaaggtaagggtatcattccacgcgcttccgtacgt |
18901932 |
T |
|
| Q |
199 |
gcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgctatgtgctatatattggtgatgtgataattatcttggt |
298 |
Q |
| |
|
| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18901933 |
gtatttgtgaatatatttgtgttgtgatgattattatagtgttgttgttttgaagtgaatgatatgtgctatatattggtgatgtgatagttatcttggt |
18902032 |
T |
|
| Q |
299 |
ggtgttgttttggcatgaatattatgtgtattatttctgtg |
339 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18902033 |
gttgttgtttttgcatgaatattatgtgtattatttctgtg |
18902073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 164 - 327
Target Start/End: Original strand, 18153328 - 18153491
Alignment:
| Q |
164 |
aaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatg-cta |
262 |
Q |
| |
|
|||||||||||||||||||| ||||||| || ||| || |||| ||||| |||||| ||||| ||||||||| || |||||||||||| | |||| || |
|
|
| T |
18153328 |
aaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtatataattgtgtggtgataattatcataatggtgttgttttgaaatgaatgatta |
18153427 |
T |
|
| Q |
263 |
tgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgt |
327 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||||||| |
|
|
| T |
18153428 |
tgtgttatatattggtgttgtgataattatcttggtggt-ttgctttggtatgaatattatgtgt |
18153491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 263
Target Start/End: Complemental strand, 51783658 - 51783494
Alignment:
| Q |
99 |
ttgtgaaggtatagacgtagtggaacaaagaatgcttcatgggaattttaagagttcttgttgcaaaggtaagggcatcactccatacgcttccttatgt |
198 |
Q |
| |
|
||||||||||||||| |||||||||||||| | | ||| ||| | |||||| | | |||||||||||| |||||||||||| ||||| || || |
|
|
| T |
51783658 |
ttgtgaaggtatagagatagtggaacaaagacggttgtatgagaactgtaagagctactattgcaaaggtaaaggcatcactccacgtgcttctgtacgt |
51783559 |
T |
|
| Q |
199 |
gcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgctat |
263 |
Q |
| |
|
|| ||||||||||||| |||| | |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
51783558 |
atatgtgtgaatatatttatgttataatgattattatagtgttgttgttttgaagtaaatgctat |
51783494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 164 - 334
Target Start/End: Original strand, 15418853 - 15419023
Alignment:
| Q |
164 |
aaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgctat |
263 |
Q |
| |
|
|||||||||||||||||||| |||||||| || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15418853 |
aaggtaagggcatcactccacacgcttccgtacgtatatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctat |
15418952 |
T |
|
| Q |
264 |
gtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt |
334 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15418953 |
gttttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt |
15419023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 164 - 339
Target Start/End: Original strand, 15425870 - 15426045
Alignment:
| Q |
164 |
aaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgctat |
263 |
Q |
| |
|
|||||||||||||||||||| |||||||| || || || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
15425870 |
aaggtaagggcatcactccacacgcttccgtacgtatatgtgtgaatatatttgtgttgtgatgattatcatagtattgttgttttgaagtgaatgctat |
15425969 |
T |
|
| Q |
264 |
gtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattatttctgtg |
339 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
15425970 |
gttctatatattggtgatgtgataattagcttggtggtgttgttttggcatgaatattatatgtattatttatgtg |
15426045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 321
Target Start/End: Complemental strand, 28654579 - 28654414
Alignment:
| Q |
156 |
ttgttgcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagta |
255 |
Q |
| |
|
|||||| ||||||||||||||||||||| || |||| || ||| || |||| ||||| || ||||||||| ||||||||| || ||||||||||| | |
|
|
| T |
28654579 |
ttgttgtaaaggtaagggcatcactccacgcgtttccgtacgtgtatatgtgtatataattctgttgtgataattatcataatggggttgttttgaaatg |
28654480 |
T |
|
| Q |
256 |
aatg-ctatgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatatt |
321 |
Q |
| |
|
|||| |||||| |||||||||||| ||||||||||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
28654479 |
aatgattatgtgttatatattggtgttgtgataattatcttggtggt-ttgctttggaatgaatatt |
28654414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 327
Target Start/End: Original strand, 52944820 - 52944934
Alignment:
| Q |
209 |
atatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgctatgtgctatatattggtgatgtgataattatcttggtggtgttgttt |
308 |
Q |
| |
|
|||||||||||||||||| ||||| || |||||||||||| | |||||||||| ||| ||||||| ||||||||||| ||||||||| || ||| |
|
|
| T |
52944820 |
atatatttgtgttgtgataattat-----tggtgttgttttgaaatgaatgctatgtattattaattggtgttgtgataattaccttggtggttttattt |
52944914 |
T |
|
| Q |
309 |
tggcatg-aatattatgtgt |
327 |
Q |
| |
|
| ||||| |||||||||||| |
|
|
| T |
52944915 |
tagcatgaaatattatgtgt |
52944934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 163 - 339
Target Start/End: Original strand, 19932666 - 19932842
Alignment:
| Q |
163 |
aaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgcta |
262 |
Q |
| |
|
||||||||||||||||||||| ||||||| || ||| || | ||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
19932666 |
aaaggtaagggcatcactccacgcgcttccgtacgtgtatttatgaatatatttgtgtcgtgatgattattatagtgttgttgttttgaagtgaatgcta |
19932765 |
T |
|
| Q |
263 |
tgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattatttctgtg |
339 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19932766 |
tgtgctatatattgctgatgtgatagttatcttggtggtggtgttttggcatgaatattatgtgtattatttctgtg |
19932842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 161 - 339
Target Start/End: Original strand, 1311404 - 1311582
Alignment:
| Q |
161 |
gcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgc |
260 |
Q |
| |
|
||||| ||||| | ||||||||| ||||||| || ||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| | |
|
|
| T |
1311404 |
gcaaatgtaagagtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattattatagtgttgttgttttgaagtgaatac |
1311503 |
T |
|
| Q |
261 |
tatgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattatttctgtg |
339 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1311504 |
tatgtgttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattatttatgtg |
1311582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 164 - 339
Target Start/End: Original strand, 3224669 - 3224846
Alignment:
| Q |
164 |
aaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgctat |
263 |
Q |
| |
|
|||||||||||||||||||| || |||| || || || || |||||||||||||||||| |||| |||| || |||||||| ||| | |||| ||| |
|
|
| T |
3224669 |
aaggtaagggcatcactccacgcgtttccgtacatgtatatgattatatatttgtgttgtgataattagcatattgctgttgttt-gaaatgaatgttat |
3224767 |
T |
|
| Q |
264 |
gtgctata--tattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtg-tattatttctgtg |
339 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| |||| |
|
|
| T |
3224768 |
gtgctatatatattggtgttgtgataattatcttggtgttgttgttttgacatgaatattatgtgttattatttatgtg |
3224846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 339
Target Start/End: Complemental strand, 11035057 - 11034881
Alignment:
| Q |
164 |
aaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgct-a |
262 |
Q |
| |
|
||||||||||||||||| || || |||| || || || |||| ||||| |||||||||||| ||||||||| || |||||||||||| | |||| | | |
|
|
| T |
11035057 |
aaggtaagggcatcacttcacgcgtttccgtacatgtatatgtgtatataattgtgttgtgataattatcataatgatgttgttttgaaatgaatgatta |
11034958 |
T |
|
| Q |
263 |
tgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtg-tattatttctgtg |
339 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||| | ||| ||||| ||||||||||| || |||||||| |||| |
|
|
| T |
11034957 |
tgtgttatatattggtgttgtgataattatcttggtgat-ttgctttggtatgaatattatttgttattatttgtgtg |
11034881 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 156 - 327
Target Start/End: Complemental strand, 34792 - 34620
Alignment:
| Q |
156 |
ttgttgcaaaggtaagggcatcactccatacgcttccttatgtgcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagta |
255 |
Q |
| |
|
|||||| ||||||||||||||||||||| || |||| || ||| || ||| ||||| ||||||||||| ||||| | ||| || | ||||||| | |
|
|
| T |
34792 |
ttgttgtaaaggtaagggcatcactccacgcgtttccgtacgtgtatatgtatatataactgtgttgtgataattattttggtggtgctattttgaaatg |
34693 |
T |
|
| Q |
256 |
aatgct-atgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgt |
327 |
Q |
| |
|
|| | | ||||| | |||||| ||| |||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
34692 |
aaggattatgtgttttatatttgtgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgt |
34620 |
T |
|
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Target: scaffold0655 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 327
Target Start/End: Original strand, 7541 - 7650
Alignment:
| Q |
212 |
tatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgctatgtgctatatattggtgatgtgataattatcttggtggtgttgttttgg |
311 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||||| | | |||||| ||| |||||||| ||| ||||||||||||||||| |||||||| |
|
|
| T |
7541 |
tatttgtgttgtgataattatcatggtgttgtt---ttgaaatg---gttatgtgttatgtattggtgttgtaataattatcttggtggttttgttttgc |
7634 |
T |
|
| Q |
312 |
catgaatattatgtgt |
327 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7635 |
catgaatattatgtgt |
7650 |
T |
|
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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 327
Target Start/End: Complemental strand, 29963092 - 29963026
Alignment:
| Q |
261 |
tatgtgctatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgt |
327 |
Q |
| |
|
|||||| | |||||| ||| |||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
29963092 |
tatgtgttttatatttgtgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgt |
29963026 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 327
Target Start/End: Original strand, 2038873 - 2039102
Alignment:
| Q |
99 |
ttgtgaaggtatagacgtagtggaacaaagaatgcttcatgggaattttaagagttcttgttgcaaaggtaagggcatcactccatacgcttccttatgt |
198 |
Q |
| |
|
|||||||||||| || ||||||||||||||| |||| | || | | |||||| || || ||| |||||||||| |||||||||| |||||| || | |
|
|
| T |
2038873 |
ttgtgaaggtatggatgtagtggaacaaagactgctccttgaggagtttaaggattgtttttgtaaaggtaaggacatcactccacgtgcttccgtacat |
2038972 |
T |
|
| Q |
199 |
gcatctgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtaaatgct-atgtgctatatattggtgatgtgataattatcttgg |
297 |
Q |
| |
|
| || ||| ||||| ||||||||||| ||||| | ||| || |||||||| | || | | ||||| | |||||| ||| | |||||||||| |||| |
|
|
| T |
2038973 |
gtatatgtatatataactgtgttgtgataattattttggtggtgccgttttgaaatgaaggattatgtgttttatatttgtgttatgataattattttgg |
2039072 |
T |
|
| Q |
298 |
tggtgttgttttggcatgaatattatgtgt |
327 |
Q |
| |
|
||||||||||||| ||||||||| |||||| |
|
|
| T |
2039073 |
tggtgttgttttgacatgaatatcatgtgt |
2039102 |
T |
|
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 32870312 - 32870275
Alignment:
| Q |
204 |
tgtgaatatatttgtgttgtgatgattatcatagtgtt |
241 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
32870312 |
tgtgtatatatttatgttgtgatgattatcatagtgtt |
32870275 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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