View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5813_low_25 (Length: 322)
Name: NF5813_low_25
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 28954777 - 28954485
Alignment:
| Q |
19 |
gagtcgaccattaataatctttggtggaatcaaaatcaacctctccaagattgttgctctttgcaaaacttgctttactaattgaagttcggcagacata |
118 |
Q |
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| T |
28954777 |
gagtcgaccattaataatctttggtggaatcaaaatcaacctctccaagattgttgctctttgcaaaacttgctttactaattgaagttcagctgacata |
28954678 |
T |
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| Q |
119 |
tactcaaaatttctgattactacaactttgagtttagtaaatctgtaattgcagttgtcgatgtgatgtttatgatacaattgccaatatattgcaaggt |
218 |
Q |
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| T |
28954677 |
tattcaaaatttctgattactacaactttgagttgagtaaatctgtgattgcagttgtcaatgtgatgtttatgatacaattgccaatatattgcaaggt |
28954578 |
T |
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| Q |
219 |
caaattggtaatcatttaactgcacatataatttaaagtcaggcacaagacaacataaataaatcatagatatattttcaaatttagattcat |
311 |
Q |
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| T |
28954577 |
caaattggtaatcatttaactgcacatataatttaaagtcaggcacaagacaacataaataaatcatagatatatttttaaatttagattcat |
28954485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 31 - 262
Target Start/End: Complemental strand, 32406443 - 32406212
Alignment:
| Q |
31 |
aataatctttggtggaatcaaaatcaacctctccaagattgttgctctttgcaaaacttgctttactaattgaagttcggcagacatatactcaaaattt |
130 |
Q |
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| T |
32406443 |
aataatctttggtggaattagcaccagcctctccaaaattaccgcttttagcaaaactatctttactaattcaagctcagaaggcagatacttaaaacct |
32406344 |
T |
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| Q |
131 |
ctgattactacaactttgagtttagtaaatctgtaattgcagttgtcgatgtgatgtttatgatacaattgccaatatattgcaaggtcaaattggtaat |
230 |
Q |
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| T |
32406343 |
gtcagcactacaactttgagttgagtaaatttgtgattgcaattgtcaatgtgaggtttctggtgcatttgccaatgtgttccaaggtcaaactggtgat |
32406244 |
T |
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| Q |
231 |
catttaactgcacatataatttaaagtcaggc |
262 |
Q |
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| T |
32406243 |
catttagctgcacatgtagtttaaagttaggc |
32406212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 60 - 259
Target Start/End: Original strand, 16901746 - 16901945
Alignment:
| Q |
60 |
tctccaagattgttgctctttgcaaaacttgctttactaattgaagttcggcagacatatactcaaaatttctgattactacaactttgagtttagtaaa |
159 |
Q |
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| T |
16901746 |
tctccaatattgttgctctttgcaaaattatctttagtagctcaagttcagaaggtaaaaacttaaaacttctcatcactgcaactttgagttgagtaaa |
16901845 |
T |
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| Q |
160 |
tctgtaattgcagttgtcgatgtgatgtttatgatacaattgccaatatattgcaaggtcaaattggtaatcatttaactgcacatataatttaaagtca |
259 |
Q |
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| T |
16901846 |
tttgtgattgcatttgtcaagttgaagtttatggtgcaattcccaataaattccaaggtcaaatttgtaattttttagctgcaaatataggttaaagtca |
16901945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 257
Target Start/End: Complemental strand, 28840843 - 28840640
Alignment:
| Q |
54 |
tcaacctctccaagattgttgctctttgcaaaacttgctttactaattgaagttcggcagacatatactcaaaatttctgattactacaactttgagttt |
153 |
Q |
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| T |
28840843 |
tcaacctctccaaaattgttgctctttgcaaaactatctttaccaactcaagttctgaaggaagaaacttaaaactccttatcaccagaactttgagctg |
28840744 |
T |
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| Q |
154 |
agtaaatctgtaattgcagttgtcgatgtgatgtttatgatacaattgccaatatattgcaaggtcaaattggtaatcatttaactgcacatataattta |
253 |
Q |
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| T |
28840743 |
agtaaatttgtgattacagttgttaagtagaggctgctggttcaatttccaatacattccaaggtcaaatatgtaatcatttagctgcatatatagttta |
28840644 |
T |
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| Q |
254 |
aagt |
257 |
Q |
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|||| |
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| T |
28840643 |
aagt |
28840640 |
T |
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