View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5813_low_28 (Length: 304)
Name: NF5813_low_28
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 396773 - 396477
Alignment:
| Q |
1 |
accttagagagagatcgaaatctgagagcatgatatgaccatcttctctcaccaacacattctccggtttaaggtctctatagattattccaagcatgtg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
396773 |
accttagagagagatcgaaatctgagagcatgatatgaccatcttctctcaccaacacattctccggtttaaggtctctatagattattccaagcatgtg |
396674 |
T |
|
| Q |
101 |
caagtactccaaagcaaggagaacttctgcaacataaaacctgtaaaaacccaaaaatggaaattagagaaatgttaatacacttggacactgttaggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
396673 |
caagtactccaaagcaaggagaacttctgcaacataaaacctgtaaaaacccaaaaatggaaattagagaaatgttaatacatttggacactgttaggat |
396574 |
T |
|
| Q |
201 |
aaacatcttacttaagtgcttataacataagtgtttattatacaagtataagctatttctataagctatatgctttcattagtctggtttcatatca |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
396573 |
aaacatcttacttaagtgcttataacataagtgtttattatacaagtataagctatttctataagctatatgctttcattagtctggtttcatatca |
396477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 3 - 143
Target Start/End: Original strand, 12234136 - 12234276
Alignment:
| Q |
3 |
cttagagagagatcgaaatctgagagcatgatatgaccatcttctctcaccaacacattctccggtttaaggtctctatagattattccaagcatgtgca |
102 |
Q |
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|||||||||||||||||||| || ||||| || ||||||||||||||||||||||| ||||| || ||||||||||| ||||| |||||||||||||||| |
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| T |
12234136 |
cttagagagagatcgaaatccgatagcattatgtgaccatcttctctcaccaacacgttctcgggcttaaggtctctgtagatgattccaagcatgtgca |
12234235 |
T |
|
| Q |
103 |
agtactccaaagcaaggagaacttctgcaacataaaacctg |
143 |
Q |
| |
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| T |
12234236 |
agtactccaaagcaaggagaacttctgctacataaaacctg |
12234276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 42196937 - 42196991
Alignment:
| Q |
89 |
tccaagcatgtgcaagtactccaaagcaaggagaacttctgcaacataaaacctg |
143 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
42196937 |
tccaagcatgtgcaagtactccaaagcaaggaggacttcagcaacataaaacctg |
42196991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 27481488 - 27481428
Alignment:
| Q |
187 |
gacactgttaggataaacatcttacttaagtgcttataacataagtgtttattatacaagt |
247 |
Q |
| |
|
||||||||| ||||||||| |||| ||| ||||||||| ||||| ||||||||||| |||| |
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|
| T |
27481488 |
gacactgtttggataaacaacttaattaggtgcttatagcataaatgtttattatataagt |
27481428 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 657874 - 657818
Alignment:
| Q |
191 |
ctgttaggataaacatcttacttaagtgcttataacataagtgtttattatacaagt |
247 |
Q |
| |
|
||||| ||||||||| |||| |||||||||||| ||||||||| |||| ||| |||| |
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|
| T |
657874 |
ctgtttggataaacaacttaattaagtgcttatcacataagtgattatcatagaagt |
657818 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 26484881 - 26484831
Alignment:
| Q |
93 |
agcatgtgcaagtactccaaagcaaggagaacttctgcaacataaaacctg |
143 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| ||||||||||||||| |
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|
| T |
26484881 |
agcatgtgcaagtactccaaagcaagaaggacttcagcaacataaaacctg |
26484831 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 6072943 - 6073085
Alignment:
| Q |
4 |
ttagagagagatcgaaatctgagagcatgatatgaccatcttctctcaccaacacattctccggtttaaggtctctatagattattccaagcatgtgcaa |
103 |
Q |
| |
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|||| |||||||| ||||||||||||||||| ||||| || ||| || ||||| || ||||| || | ||||| ||||||||||| | |||||||| |
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| T |
6072943 |
ttagtgagagatcaaaatctgagagcatgatgtgaccgtccgatctgactaacacgttttccggctttaaatctctgtagattattcctaacatgtgcag |
6073042 |
T |
|
| Q |
104 |
gtactccaaagcaaggagaacttctgcaacataaaacctgtaa |
146 |
Q |
| |
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|||||||| || | || ||||| || |||||||||||||| |
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| T |
6073043 |
atactccaatgccaccagtacttcagccgcataaaacctgtaa |
6073085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 1035184 - 1035272
Alignment:
| Q |
12 |
agatcgaaatctgagagcatgatatgaccatcttctctcaccaacacattctccggtttaaggtctctatagattattccaagcatgtg |
100 |
Q |
| |
|
||||| ||||| || ||||| || |||||||| |||| ||||||||||| || |||||||||||||| || | | |||||||||||| |
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| T |
1035184 |
agatcaaaatccgaaagcattatgtgaccatcgtctcgaaccaacacattttcaggtttaaggtctctgtacacaactccaagcatgtg |
1035272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 40205254 - 40205206
Alignment:
| Q |
199 |
ataaacatcttacttaagtgcttataacataagtgtttattatacaagt |
247 |
Q |
| |
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||||||| |||| ||| |||||||||||||||||||||||||| |||| |
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| T |
40205254 |
ataaacaacttatttacatgcttataacataagtgtttattatataagt |
40205206 |
T |
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