View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5813_low_4 (Length: 612)
Name: NF5813_low_4
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 502; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Complemental strand, 49425843 - 49425253
Alignment:
| Q |
1 |
cataaaagccacaaacaccaagctcataaaaactcaacttacttccattaaacgagtagttgatctctcaaaacatttttcatcaattgannnnnnngcc |
100 |
Q |
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| T |
49425843 |
cataaaagccacaaacaccaagctcataaaaacttaacttacttccattaaacgagtagttgatatctcaaa-catttttcatcaattgatttttttgcc |
49425745 |
T |
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| Q |
101 |
ctttgaattcgagtagttgttgatcaattgattttctaacatgcaactgctgggtttggtggattgaactgtgaaccttagcttgtacacatgttaagaa |
200 |
Q |
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| T |
49425744 |
ctttgaattcgagtagttgttcatcaattgattttctaacatgcaactgctgggtttggtggattgaactgtgaaccttagcttgtacacatgttaagaa |
49425645 |
T |
|
| Q |
201 |
aatattatacttaaaactcatcaacctctttttgcttgtttatgacttggactctcaaatgacttcaataagccagatccatgttctttgtagttctatg |
300 |
Q |
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| T |
49425644 |
aatattatacttaaaactcatcaacctctttttgcttgtttatgacttggactctcaaatgacttcaataagccagatcgatgttttttgtagttctatg |
49425545 |
T |
|
| Q |
301 |
ctaacttatgttttcatctttgtcatatgttgtcttttctctttaacacagaagcatggacaaagactaaacaaatattttatttctcaaaggaatctgt |
400 |
Q |
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| T |
49425544 |
ctaacttatgttttcatctttgtcatatgttgtcttttctctttaacacagaagcatggacaaagattaaacaaatattttatttctcaaaggaatctgt |
49425445 |
T |
|
| Q |
401 |
atttgtctttattttgattgtactaatgttttgattgctccattacaaaaggacttatagactaaatgnnnnnnnnccggaagatttggtttattaagta |
500 |
Q |
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| T |
49425444 |
atttgtctttattttgattgtactaatgttttgattgctccattacaaaaggacttatagactaaatg-tttttttccggaagatttggtttattaagta |
49425346 |
T |
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| Q |
501 |
tgtaagtaagtaccactaggacggggagtgattaagaacttaggaaaaggttcttcaagagaggagaaagttctaacatcctccaacatctcacc |
595 |
Q |
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| T |
49425345 |
tgtaagtaagtaccactaggacggggagtgattaagaacttaggaaaaggttcttca--agaggagaaagttctaacatcctccaacatctcacc |
49425253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 49444878 - 49444806
Alignment:
| Q |
336 |
tttctctttaacacagaagcatggacaaagactaaacaaatattttatttctcaaaggaatctgtatttgtct |
408 |
Q |
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| T |
49444878 |
tttctctttgacacagaagtatggacaaagcctaaacaaatagttgatttttcaaaggtatctttatttgtct |
49444806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 314 - 397
Target Start/End: Complemental strand, 49423341 - 49423259
Alignment:
| Q |
314 |
tcatctttgtcatatgttgtcttttctctttaacacagaagcatggacaaagactaaacaaatattttatttctcaaaggaatc |
397 |
Q |
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| T |
49423341 |
tcatctttgtcatgtgctatcttttctttttggcacagaagaatggacaaa-attaaacaaatatttgatttctaaaaggaatc |
49423259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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