View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5813_low_40 (Length: 238)
Name: NF5813_low_40
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 54571806 - 54571584
Alignment:
| Q |
1 |
tacctccagaaattcaagcatccattcatctatagatgctttggacaacaacttatcttcaaggaacttcagcataatcattctcatgttcctattattg |
100 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54571806 |
tacctcgagaagttcaagcatccattcatctatagatgctttcgacaacaactcatcttcaaggaacttcagcataatcattctcatgttcctattattg |
54571707 |
T |
|
| Q |
101 |
atttcggtaactgaggagtttactttaatcagttccttaatacactcactctttatacttgattctccaagaacgaattccaaacaccaccctaaccttt |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54571706 |
atttcggtaactgagtagtttactttaatcagttccttaatacactcactatctatacttgattctccaagaacgaattccaaacaccaccctaaccttt |
54571607 |
T |
|
| Q |
201 |
ccattttcaaattcctttctctt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
54571606 |
ccattttcaaattcctttctctt |
54571584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 55155073 - 55154851
Alignment:
| Q |
1 |
tacctccagaaattcaagcatccattcatctatagatgctttggacaacaacttatcttcaaggaacttcagcataatcattctcatgttcctattattg |
100 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55155073 |
tacctcgagaagttcaagcatccattcatctatagatgctttcgacaacaactcatcttcaaggaacttcagcataatcattctcatgttcctattattg |
55154974 |
T |
|
| Q |
101 |
atttcggtaactgaggagtttactttaatcagttccttaatacactcactctttatacttgattctccaagaacgaattccaaacaccaccctaaccttt |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55154973 |
atttcggtaactgagtagtttactttaatcagttccttaatacactcactatctatacttgattctccaagaacgaattccaaacaccaccctaaccttt |
55154874 |
T |
|
| Q |
201 |
ccattttcaaattcctttctctt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
55154873 |
ccattttcaaattcctttctctt |
55154851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 20791994 - 20792101
Alignment:
| Q |
32 |
atagatgctttggacaacaacttatcttcaaggaacttcagcataatcattctcatgttcctattattgatttcggtaactgaggagtttactttaatca |
131 |
Q |
| |
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|||||||||||||||||||||| |||||||| | |||| | ||||||| |||| ||||||||||||||||| || ||| || |||||||||||| |
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| T |
20791994 |
atagatgctttggacaacaactcatcttcaacggttttcaatagaatcattttcatcttcctattattgatttcagtgact---gaaattactttaatca |
20792090 |
T |
|
| Q |
132 |
gttccttaata |
142 |
Q |
| |
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||||||||||| |
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| T |
20792091 |
gttccttaata |
20792101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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