View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5813_low_41 (Length: 238)

Name: NF5813_low_41
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5813_low_41
NF5813_low_41
[»] chr7 (5 HSPs)
chr7 (93-238)||(22005904-22006049)
chr7 (93-234)||(7892684-7892825)
chr7 (1-235)||(3598829-3599047)
chr7 (15-82)||(7892814-7892881)
chr7 (15-82)||(22006038-22006105)
[»] chr6 (2 HSPs)
chr6 (93-238)||(3590525-3590670)
chr6 (15-82)||(3590659-3590726)
[»] chr5 (2 HSPs)
chr5 (93-238)||(32674196-32674341)
chr5 (15-82)||(32674330-32674397)
[»] chr4 (6 HSPs)
chr4 (93-238)||(41860528-41860673)
chr4 (93-234)||(52681661-52681802)
chr4 (15-82)||(41860472-41860539)
chr4 (15-82)||(52681791-52681858)
chr4 (152-234)||(30576545-30576627)
chr4 (168-230)||(14991361-14991423)
[»] chr3 (6 HSPs)
chr3 (93-238)||(36092458-36092603)
chr3 (93-237)||(18200674-18200818)
chr3 (93-238)||(26950444-26950589)
chr3 (15-82)||(18200807-18200874)
chr3 (23-82)||(26950578-26950637)
chr3 (15-82)||(36092402-36092469)
[»] chr2 (6 HSPs)
chr2 (93-238)||(13907186-13907331)
chr2 (93-234)||(26454835-26454976)
chr2 (93-234)||(40604672-40604813)
chr2 (15-82)||(13907320-13907387)
chr2 (15-82)||(26454965-26455032)
chr2 (15-82)||(40604802-40604869)
[»] chr8 (2 HSPs)
chr8 (93-238)||(14995135-14995280)
chr8 (15-82)||(14995079-14995146)
[»] chr1 (5 HSPs)
chr1 (93-235)||(35595605-35595747)
chr1 (93-234)||(2045904-2046045)
chr1 (15-82)||(35595549-35595616)
chr1 (15-82)||(2045848-2045915)
chr1 (163-230)||(52589715-52589782)


Alignment Details
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 93 - 238
Target Start/End: Complemental strand, 22006049 - 22005904
Alignment:
Q  93 ccttcttgcaacaaccaccactgcataaacctccttctagaatataacaaacnnnnnnngagatgataataaattagatagcaatgcaattcaaaaagtc 192  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  22006049 ccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtc 22005950  T
Q  193 atctgattacaaataaccaaacatcaaactaaacaaatgctcctac 238  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||    
T  22005949 atcggattacaaataaccaaaaatcaaactaaacaaatgctcctac 22005904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 93 - 234
Target Start/End: Complemental strand, 7892825 - 7892684
Alignment:
Q  93 ccttcttgcaacaaccaccactgcataaacctccttctagaatataacaaacnnnnnnngagatgataataaattagatagcaatgcaattcaaaaagtc 192  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||    
T  7892825 ccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatccaattcaaaaagtc 7892726  T
Q  193 atctgattacaaataaccaaacatcaaactaaacaaatgctc 234  Q
    ||| ||||||||||||||||| ||||||||||||||||||||    
T  7892725 atcggattacaaataaccaaaaatcaaactaaacaaatgctc 7892684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 3598829 - 3599047
Alignment:
Q  1 aatatagagagggtagacacaatcacatcagtttaatcaaccaccaccgtataaattatcactgcgagggccttcttgcaaccttcttgcaaccttcttg 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||                      |||||||    
T  3598829 aatatagagagggtagacacagtcacatcagtttaatcaaccaccaccgtataaattatcatcgcgagggc----------------------cttcttg 3598906  T
Q  101 caacaaccaccactgcataaacctccttctaga------atataacaaacnnnnnnngagatgataataaattagatagcaatgcaattcaaaaagtcat 194  Q
    ||||||||||||| |||||||||||||||||||      |||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  3598907 caacaaccaccaccgcataaacctccttctagatctagaatataacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcat 3599006  T
Q  195 ctgattacaaataaccaaacatcaaactaaacaaatgctcc 235  Q
    |  | |||||||||||||| |||||||||||||||||||||    
T  3599007 cgaaatacaaataaccaaaaatcaaactaaacaaatgctcc 3599047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 7892881 - 7892814
Alignment:
Q  15 agacacaatcacatcagtttaatcaaccaccaccgtataaattatcactgcgagggccttcttgcaac 82  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7892881 agacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaac 7892814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 22006105 - 22006038
Alignment:
Q  15 agacacaatcacatcagtttaatcaaccaccaccgtataaattatcactgcgagggccttcttgcaac 82  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22006105 agacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaac 22006038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 93 - 238
Target Start/End: Complemental strand, 3590670 - 3590525
Alignment:
Q  93 ccttcttgcaacaaccaccactgcataaacctccttctagaatataacaaacnnnnnnngagatgataataaattagatagcaatgcaattcaaaaagtc 192  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  3590670 ccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtc 3590571  T
Q  193 atctgattacaaataaccaaacatcaaactaaacaaatgctcctac 238  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||    
T  3590570 atcggattacaaataaccaaaaatcaaactaaacaaatgctcctac 3590525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 3590726 - 3590659
Alignment:
Q  15 agacacaatcacatcagtttaatcaaccaccaccgtataaattatcactgcgagggccttcttgcaac 82  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3590726 agacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaac 3590659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 93 - 238
Target Start/End: Complemental strand, 32674341 - 32674196
Alignment:
Q  93 ccttcttgcaacaaccaccactgcataaacctccttctagaatataacaaacnnnnnnngagatgataataaattagatagcaatgcaattcaaaaagtc 192  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  32674341 ccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtc 32674242  T
Q  193 atctgattacaaataaccaaacatcaaactaaacaaatgctcctac 238  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||    
T  32674241 atcggattacaaataaccaaaaatcaaactaaacaaatgctcctac 32674196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 32674397 - 32674330
Alignment:
Q  15 agacacaatcacatcagtttaatcaaccaccaccgtataaattatcactgcgagggccttcttgcaac 82  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32674397 agacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaac 32674330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 93 - 238
Target Start/End: Original strand, 41860528 - 41860673
Alignment:
Q  93 ccttcttgcaacaaccaccactgcataaacctccttctagaatataacaaacnnnnnnngagatgataataaattagatagcaatgcaattcaaaaagtc 192  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  41860528 ccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtc 41860627  T
Q  193 atctgattacaaataaccaaacatcaaactaaacaaatgctcctac 238  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||    
T  41860628 atcggattacaaataaccaaaaatcaaactaaacaaatgctcctac 41860673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 93 - 234
Target Start/End: Complemental strand, 52681802 - 52681661
Alignment:
Q  93 ccttcttgcaacaaccaccactgcataaacctccttctagaatataacaaacnnnnnnngagatgataataaattagatagcaatgcaattcaaaaagtc 192  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||    
T  52681802 ccttcttgcaacaaccaccaccgcataaatctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatccaattcaaaaagtc 52681703  T
Q  193 atctgattacaaataaccaaacatcaaactaaacaaatgctc 234  Q
    ||| ||||||||||||||||| ||||||||||||||||||||    
T  52681702 atcggattacaaataaccaaaaatcaaactaaacaaatgctc 52681661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 41860472 - 41860539
Alignment:
Q  15 agacacaatcacatcagtttaatcaaccaccaccgtataaattatcactgcgagggccttcttgcaac 82  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41860472 agacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaac 41860539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 52681858 - 52681791
Alignment:
Q  15 agacacaatcacatcagtttaatcaaccaccaccgtataaattatcactgcgagggccttcttgcaac 82  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  52681858 agacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaac 52681791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 30576545 - 30576627
Alignment:
Q  152 gagatgataataaattagatagcaatgcaattcaaaaagtcatctgattacaaataaccaaacatcaaactaaacaaatgctc 234  Q
    |||||| |||||||||||||| ||||| |||||||||| || ||  |||||||||||| ||| ||| || |||||||| ||||    
T  30576545 gagatggtaataaattagataacaatgaaattcaaaaactcgtcgaattacaaataacaaaaaatccaattaaacaaaagctc 30576627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 14991423 - 14991361
Alignment:
Q  168 agatagcaatgcaattcaaaaagtcatctgattacaaataaccaaacatcaaactaaacaaat 230  Q
    |||||||||||||||||| ||  |||||  | |||||||||||||| |||||| |||||||||    
T  14991423 agatagcaatgcaattcagaatctcatcataatacaaataaccaaagatcaaattaaacaaat 14991361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 93 - 238
Target Start/End: Original strand, 36092458 - 36092603
Alignment:
Q  93 ccttcttgcaacaaccaccactgcataaacctccttctagaatataacaaacnnnnnnngagatgataataaattagatagcaatgcaattcaaaaagtc 192  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  36092458 ccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtc 36092557  T
Q  193 atctgattacaaataaccaaacatcaaactaaacaaatgctcctac 238  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||    
T  36092558 atcagattacaaataaccaaaaatcaaactaaacaaatgctcctac 36092603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 93 - 237
Target Start/End: Complemental strand, 18200818 - 18200674
Alignment:
Q  93 ccttcttgcaacaaccaccactgcataaacctccttctagaatataacaaacnnnnnnngagatgataataaattagatagcaatgcaattcaaaaagtc 192  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  18200818 ccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtc 18200719  T
Q  193 atctgattacaaataaccaaacatcaaactaaacaaatgctccta 237  Q
    ||| ||||||||||||||||| |||||||||||||||||||||||    
T  18200718 atcggattacaaataaccaaaaatcaaactaaacaaatgctccta 18200674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 93 - 238
Target Start/End: Complemental strand, 26950589 - 26950444
Alignment:
Q  93 ccttcttgcaacaaccaccactgcataaacctccttctagaatataacaaacnnnnnnngagatgataataaattagatagcaatgcaattcaaaaagtc 192  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||       ||||||||||||||||||||| |||||||||||||||||||    
T  26950589 ccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagataacaatgcaattcaaaaagtc 26950490  T
Q  193 atctgattacaaataaccaaacatcaaactaaacaaatgctcctac 238  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||    
T  26950489 atcggattacaaataaccaaaaatcaaactaaacaaatgctcctac 26950444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 18200874 - 18200807
Alignment:
Q  15 agacacaatcacatcagtttaatcaaccaccaccgtataaattatcactgcgagggccttcttgcaac 82  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18200874 agacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaac 18200807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 26950637 - 26950578
Alignment:
Q  23 tcacatcagtttaatcaaccaccaccgtataaattatcactgcgagggccttcttgcaac 82  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26950637 tcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaac 26950578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 36092402 - 36092469
Alignment:
Q  15 agacacaatcacatcagtttaatcaaccaccaccgtataaattatcactgcgagggccttcttgcaac 82  Q
    |||||||||||||| ||| |||||||||||||| |||||||||||||| |||||||||||||||||||    
T  36092402 agacacaatcacattagtataatcaaccaccactgtataaattatcaccgcgagggccttcttgcaac 36092469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 93 - 238
Target Start/End: Complemental strand, 13907331 - 13907186
Alignment:
Q  93 ccttcttgcaacaaccaccactgcataaacctccttctagaatataacaaacnnnnnnngagatgataataaattagatagcaatgcaattcaaaaagtc 192  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  13907331 ccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtc 13907232  T
Q  193 atctgattacaaataaccaaacatcaaactaaacaaatgctcctac 238  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||    
T  13907231 atcggattacaaataaccaaaaatcaaactaaacaaatgctcctac 13907186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 93 - 234
Target Start/End: Complemental strand, 26454976 - 26454835
Alignment:
Q  93 ccttcttgcaacaaccaccactgcataaacctccttctagaatataacaaacnnnnnnngagatgataataaattagatagcaatgcaattcaaaaagtc 192  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  26454976 ccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtc 26454877  T
Q  193 atctgattacaaataaccaaacatcaaactaaacaaatgctc 234  Q
    ||| ||||||||||||||||| ||||||||||||||||||||    
T  26454876 atcggattacaaataaccaaaaatcaaactaaacaaatgctc 26454835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 93 - 234
Target Start/End: Complemental strand, 40604813 - 40604672
Alignment:
Q  93 ccttcttgcaacaaccaccactgcataaacctccttctagaatataacaaacnnnnnnngagatgataataaattagatagcaatgcaattcaaaaagtc 192  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||    
T  40604813 ccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatccaattcaaaaagtc 40604714  T
Q  193 atctgattacaaataaccaaacatcaaactaaacaaatgctc 234  Q
    ||| ||||||||||||||||| ||||||||||||||||||||    
T  40604713 atcggattacaaataaccaaaaatcaaactaaacaaatgctc 40604672  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 13907387 - 13907320
Alignment:
Q  15 agacacaatcacatcagtttaatcaaccaccaccgtataaattatcactgcgagggccttcttgcaac 82  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13907387 agacacattcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaac 13907320  T

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Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 26455032 - 26454965
Alignment:
Q  15 agacacaatcacatcagtttaatcaaccaccaccgtataaattatcactgcgagggccttcttgcaac 82  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26455032 agacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaac 26454965  T

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Target: chr2; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 40604869 - 40604802
Alignment:
Q  15 agacacaatcacatcagtttaatcaaccaccaccgtataaattatcactgcgagggccttcttgcaac 82  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40604869 agacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaac 40604802  T

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Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 93 - 238
Target Start/End: Original strand, 14995135 - 14995280
Alignment:
Q  93 ccttcttgcaacaaccaccactgcataaacctccttctagaatataacaaacnnnnnnngagatgataataaattagatagcaatgcaattcaaaaagtc 192  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| ||||    
T  14995135 ccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaacagtc 14995234  T
Q  193 atctgattacaaataaccaaacatcaaactaaacaaatgctcctac 238  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||    
T  14995235 atcggattacaaataaccaaaaatcaaactaaacaaatgctcctac 14995280  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 14995079 - 14995146
Alignment:
Q  15 agacacaatcacatcagtttaatcaaccaccaccgtataaattatcactgcgagggccttcttgcaac 82  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  14995079 agacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccacgagggccttcttgcaac 14995146  T

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Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 93 - 235
Target Start/End: Original strand, 35595605 - 35595747
Alignment:
Q  93 ccttcttgcaacaaccaccactgcataaacctccttctagaatataacaaacnnnnnnngagatgataataaattagatagcaatgcaattcaaaaagtc 192  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  35595605 ccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaggagatgataataaattagatagcaatgcaattcaaaaagtc 35595704  T
Q  193 atctgattacaaataaccaaacatcaaactaaacaaatgctcc 235  Q
    | | ||||||||||||||||| |||||||||||||||||||||    
T  35595705 aacggattacaaataaccaaaaatcaaactaaacaaatgctcc 35595747  T

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Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 93 - 234
Target Start/End: Original strand, 2045904 - 2046045
Alignment:
Q  93 ccttcttgcaacaaccaccactgcataaacctccttctagaatataacaaacnnnnnnngagatgataataaattagatagcaatgcaattcaaaaagtc 192  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||    
T  2045904 ccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatccaattcaaaaagtc 2046003  T
Q  193 atctgattacaaataaccaaacatcaaactaaacaaatgctc 234  Q
    ||| ||||||||||||||||| ||||||||||| ||||||||    
T  2046004 atcggattacaaataaccaaaaatcaaactaaataaatgctc 2046045  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 35595549 - 35595616
Alignment:
Q  15 agacacaatcacatcagtttaatcaaccaccaccgtataaattatcactgcgagggccttcttgcaac 82  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35595549 agacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaac 35595616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 2045848 - 2045915
Alignment:
Q  15 agacacaatcacatcagtttaatcaaccaccaccgtataaattatcactgcgagggccttcttgcaac 82  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2045848 agacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaac 2045915  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 52589782 - 52589715
Alignment:
Q  163 aaattagatagcaatgcaattcaaaaagtcatctgattacaaataaccaaacatcaaactaaacaaat 230  Q
    ||||||||||||||||||||||||||| || |   |||||||||||| ||| ||||||  ||||||||    
T  52589782 aaattagatagcaatgcaattcaaaaactcgttacattacaaataacaaaaaatcaaatcaaacaaat 52589715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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