View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5813_low_5 (Length: 549)
Name: NF5813_low_5
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 12 - 526
Target Start/End: Original strand, 52475211 - 52475725
Alignment:
| Q |
12 |
acagagactcacaggaaatcttgaaggattgaagatctccgggtcattgtgaatagttggatcatgatgtatagatctagcatcaatattgatgttccaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52475211 |
acagagactcacaggaaatcttgaaggattgaagatctccgggtcattgtgaatagttggatcatgatgtatagatctagcatcaatattgatgttccaa |
52475310 |
T |
|
| Q |
112 |
cctttcttgatattaaatcctatataaatagccattaagtaattatactactgagtttatttannnnnnnccttctatattaaatctgtatacagttatt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52475311 |
cctttcttgatattaaatcctatataaatagccattaagtaattatactactgagtttatttatttttttccttctatattaaatctgtatacagttatt |
52475410 |
T |
|
| Q |
212 |
atgtaaaccttcaatttcacagtcttgaagtgctactctgggaaaccattgcactacagatgccatccttaacgcctcttttacaacctttttcatggga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52475411 |
atgtaaaccttcaatttcacagtcttgaagtgctactctgggaaaccattgcactacagatgccatccttaacgcctcttttacaacctttt-catggga |
52475509 |
T |
|
| Q |
312 |
atttaatagaaacaagtcatccaagcaagtaaatttgatgaaacgcagctaacactttcattgcatagaagtactattaatacacacacaccttggaagc |
411 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52475510 |
atttaatagaaacaagttatccaagcaagtaaatttgatgaaacgcagctaacactttcattgcatagaagtactattaatacacacacaccttggaagc |
52475609 |
T |
|
| Q |
412 |
atattgcatctcagaaagatcctttaatgtaagatacacacctccacggccttttttctcaatctcaagttgctccttctatttaatcagcaaatcacaa |
511 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52475610 |
atattgcatctcagaaagatcctttaatgtaagatacacacctccacggccttttttctcaatctgaagttgctccttctatttaatcagcaaatcacaa |
52475709 |
T |
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| Q |
512 |
ta-ttttattaaatac |
526 |
Q |
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|| ||||||||||||| |
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| T |
52475710 |
tatttttattaaatac |
52475725 |
T |
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