View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5813_low_7 (Length: 489)
Name: NF5813_low_7
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 133 - 487
Target Start/End: Original strand, 41805146 - 41805490
Alignment:
| Q |
133 |
agagagcacttcaaatcaggatttctactgcagaagaaacaatggccgctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaa |
232 |
Q |
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| T |
41805146 |
agagagcacttcaaatcaggatttctactgcagaagcaacaatggccgctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaa |
41805245 |
T |
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| Q |
233 |
cagtgtgatatctggaatcgatactgtaagcttaaannnnnnngacaaccacaaaaatattgagaaccgcatctcaaacatctcacatgagcttcaggtt |
332 |
Q |
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| T |
41805246 |
cagtgtgatatctggaatcgatactgtaagcttaaatttttttgacatccacaaaaatattgagaaccg---------catctcacatgagcttcaggtt |
41805336 |
T |
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| Q |
333 |
acaaaagaatatatcaataagatgaacaaggaaaggaggcagttacagacagatnnnnnnnccatttgttggaggagctgcagggtaaaagggaagagga |
432 |
Q |
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| T |
41805337 |
acaaaagaatatatcaataagatgaacaaggaaaagaggcagttacagacagat-aaaaaaccatttgttggaggagctgcagggtaaaagggaagagga |
41805435 |
T |
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| Q |
433 |
attaactctgagggaaaaggttgaaaagctagaggcaaaggcaagaaagggggaa |
487 |
Q |
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| T |
41805436 |
attaactctgagggaaaaggttgaaaagctagaggcaaaggcaagaaagggggaa |
41805490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 181 - 489
Target Start/End: Original strand, 41812017 - 41812323
Alignment:
| Q |
181 |
ctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaacagtgtgatatctggaatcgatactgtaagcttaaannnnnnngacaa |
280 |
Q |
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| T |
41812017 |
ctgacaatgaagcttttcatgaaactatcacaagtattaaaaagtgtgtcaacagtatgatatctgggatagatactataagctctaaattttcggatga |
41812116 |
T |
|
| Q |
281 |
ccacaaaaatattgagaaccgcatctcaaacatctcacatgagcttcaggttacaaaagaatatatcaataagatgaacaaggaaaggaggcagttacag |
380 |
Q |
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| T |
41812117 |
ctgcaataattatgagaaccgcatctcaaacatctcatacgagcttcaggttgcaaaagaatctgtcaatgagatgagtagggaaaaggggcagttacag |
41812216 |
T |
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| Q |
381 |
acagatnnnnnnnccatttgttggaggagctgcagggtaaaagggaagaggaattaactctgagggaaaaggttgaaaagctagaggcaaaggcaagaaa |
480 |
Q |
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| T |
41812217 |
acagataaaaa--ccatttattggaggagttgcagggtaaaaaggaagagggatcaactctgcagaaagaggttgaaaagctagaggcaaaggcaagaaa |
41812314 |
T |
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| Q |
481 |
gggggaatc |
489 |
Q |
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| T |
41812315 |
ggaggaatc |
41812323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 178 - 489
Target Start/End: Original strand, 41798798 - 41799107
Alignment:
| Q |
178 |
ccgctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaacagtgtgatatctggaatcgatactgtaagcttaaannnnnnnga |
277 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| || |||||| | ||| || || |
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| T |
41798798 |
ccgctaacaatgaagcttttcatgaaactatcacaagtgttaaagtgtgtgtcaacagtgtgatatctgggatagatactttgagccggaaattttccga |
41798897 |
T |
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| Q |
278 |
caaccacaaaaatattgagaaccgcatctcaaacatctcacatgagcttcaggttacaaaagaatatatcaataagatgaacaaggaaaggaggcagtta |
377 |
Q |
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| T |
41798898 |
cgaaagcaaaaatcatgagaactacatatcaaacatctcccatgagcttcaggttgcaaaagaatctgtcagcaagatgaatagggtgaaggggcagtta |
41798997 |
T |
|
| Q |
378 |
cagacagatnnnnnnnccatttgttggaggagctgcagggtaaaagggaagaggaattaactctgagggaaaaggttgaaaagctagaggcaaaggcaag |
477 |
Q |
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| T |
41798998 |
cagagagataaagattg--tttgttagaggaactgcagggtaaaaaggaaggggaattaactctgagggaaaaggttgagaagctagaggtgaaggcaag |
41799095 |
T |
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| Q |
478 |
aaagggggaatc |
489 |
Q |
| |
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| T |
41799096 |
aaaggaggaatc |
41799107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 41804776 - 41804841
Alignment:
| Q |
11 |
cagagaacattagcagaacgagcagatgcatatcagaatttgaataaagaatatgaacaagttaac |
76 |
Q |
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| T |
41804776 |
cagagaacattagcagaacgagcagatgcatatcagaatttgaataaagaatatgaacaagttaac |
41804841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 41805049 - 41805111
Alignment:
| Q |
77 |
cttcgcctgtcaaaccaaaatatccgggacaaagaacaattgctaactgaaaagggagagagc |
139 |
Q |
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| T |
41805049 |
cttcgcttgtcaaaccaaaatatccgggacaaagaacaattgctaagtgaaaagggagagagc |
41805111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 41798656 - 41798718
Alignment:
| Q |
77 |
cttcgcctgtcaaaccaaaatatccgggacaaagaacaattgctaactgaaaagggagagagc |
139 |
Q |
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| T |
41798656 |
cttcgcctgtcaaaccaaaagctccgggttacagaacaattgctaagtgaaaaggaagagagc |
41798718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 41798383 - 41798442
Alignment:
| Q |
11 |
cagagaacattagcagaacgagcagatgcatatcagaatttgaataaagaatatgaacaa |
70 |
Q |
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| T |
41798383 |
cagagaacattggaagaacaagaagatgcatatcagaagttgaatgaagaatataaacaa |
41798442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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