View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5813_low_8 (Length: 485)
Name: NF5813_low_8
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 3 - 469
Target Start/End: Original strand, 35908375 - 35908840
Alignment:
| Q |
3 |
aaaagaaaagggagaggagcaattatcttcttttatcgaagtcttttattcccttttatgtggtgtaaacaattatgttctaacccctttcaacaaagnn |
102 |
Q |
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| T |
35908375 |
aaaagaaaagggagaggagcaattatcttcttttattgaagtcttttattcccttttatgtggtgtaaacaattatgttctaacccctttcaacaaagaa |
35908474 |
T |
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| Q |
103 |
nnnnnnnnnnncttactcttataaaatgtttcaattgctggaaaatcgagaagatttgcaaaaatagagatacaatgagtgacaaagaagaataaaaggt |
202 |
Q |
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| T |
35908475 |
aaacaaaaaa-cttactctcataaaatgtttcaattgctggaaaatcgagaagatttgcaaaaatagagatacaatgagtgacaaagaagaagaaaaggt |
35908573 |
T |
|
| Q |
203 |
ggaatcacaccattttcttggatttacaatccgcaaggagagaaaggcaaagagataaatgttgtgcaaatatgagtcttataatactctttttacaaca |
302 |
Q |
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| T |
35908574 |
ggaatcacaccattttcttggatttacaatccgcaaggagagaaagacaaagagataaatattgtgcaaatatgagtcttataatactctttttacaaca |
35908673 |
T |
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| Q |
303 |
ttctctcaaacacaaacttttttattagataaaatcaatgttgatcatacactttaaaaatggatttcacataaaattgtgtggctcattatcaacatcg |
402 |
Q |
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| T |
35908674 |
ttctctcaaacacaaacttttttattatataaaatcaatgttgatcatacactttaaaaatggatttcacataaaattgtatggctcattaccaacatcg |
35908773 |
T |
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| Q |
403 |
atttctattagaggataatgttgatacatcacctatacaccttccatcggctatagcaagtcataat |
469 |
Q |
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| T |
35908774 |
atttctattagaggataatgttgatacatcacctacacaccttccatcggctatagcaagtcataat |
35908840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 469
Target Start/End: Original strand, 35910649 - 35910710
Alignment:
| Q |
408 |
tattagaggataatgttgatacatcacctatacaccttccatcggctatagcaagtcataat |
469 |
Q |
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||||||||||||| ||||||||||| ||| |||||||||| |||||||||||| ||||||| |
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| T |
35910649 |
tattagaggataaagttgatacatcctctacacaccttccaccggctatagcaaatcataat |
35910710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 27183398 - 27183459
Alignment:
| Q |
318 |
acttttttattagataaaatcaatgttgatcatacactttaaaaatggatttcacataaaat |
379 |
Q |
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| T |
27183398 |
acttttttattgggttaaatcaatgtggatcatacactttgaaaatggaattaacataaaat |
27183459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 27832940 - 27833001
Alignment:
| Q |
318 |
acttttttattagataaaatcaatgttgatcatacactttaaaaatggatttcacataaaat |
379 |
Q |
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| T |
27832940 |
acttttttattgggttaaatcaatgtggatcatacactttgaaaatggaattaacataaaat |
27833001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 4394412 - 4394469
Alignment:
| Q |
320 |
ttttttattagataaaatcaatgttgatcatacactttaaaaatggatttcacataaa |
377 |
Q |
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|||||||||| ||||||| ||||| |||| ||||||||||||||| |||||| ||||| |
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| T |
4394412 |
ttttttattaaataaaattaatgtagatcttacactttaaaaatgaatttcaaataaa |
4394469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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