View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5813_low_9 (Length: 465)
Name: NF5813_low_9
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 57 - 457
Target Start/End: Original strand, 9236232 - 9236631
Alignment:
| Q |
57 |
tttatacgtgtttgccaaaataaagtgtccaaatacgtatgatcatacaagatttcttctcataattcaactggtttaacccaaaacgcagtatttagca |
156 |
Q |
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| T |
9236232 |
tttatacgtgtttgccaaaataaagtgtccaaatacgaatgatcatataagacttcttctcataattcaactggtttaacccaaaacgcagtatttagca |
9236331 |
T |
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| Q |
157 |
taaagcacaccatata---tataatccaaaatacaaaatacactttccactgtttaaatgaagttgttaaccaacgggtgtgtatatgaaagaataggtg |
253 |
Q |
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| T |
9236332 |
aaaaacacaccatataatatataatccaaaatacaaaatacactttccactgtttaaatgaagttgttaaccaacgggtgtgtatatgaaagaataggtg |
9236431 |
T |
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| Q |
254 |
tgaaaggcaacatcaatatatcgattaactatattaggtttatgtgaatccactatttaaagcctaagatatggccgaaagtttacaacaagccaatgta |
353 |
Q |
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| T |
9236432 |
tgaaaggcaacatcaatatatcgattaactatattaggtttatgtgaatccattatttaaagcctaagatatggccgaaagttt-caacaagccaatgta |
9236530 |
T |
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| Q |
354 |
caagagttatcttagtggttggttattaagttttcca-cctatgtgttactcacacactcgattttannnnnnncaaaattaccttttgctcggtaagta |
452 |
Q |
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| T |
9236531 |
caagagttatcttag----tggttattaagttttccaccctatgtgttactcacacactcgattttatttttttcaaaattaccttttgctcggtaaata |
9236626 |
T |
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