View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5814-Insertion-1 (Length: 1005)
Name: NF5814-Insertion-1
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814-Insertion-1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 934; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 934; E-Value: 0
Query Start/End: Original strand, 9 - 998
Target Start/End: Complemental strand, 53492557 - 53491563
Alignment:
| Q |
9 |
gttgcttgggtaacaaagtctggacattctgatttggaagctcatcttgctcttcgtccaagtagtgaaactatcatgtatccctattactctaagtgga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53492557 |
gttgcttgggtaacaaagtctggacattctgatttggaagctcatcttgctcttcgtccaagtagtgaaactatcatgtatccctattactctaagtgga |
53492458 |
T |
|
| Q |
109 |
taaggggacatcgtgacttgcctttgaaacttaatcaatggtgcaatgctgttagatgggtggtcggagatcccacaccattcatcaggtactttctttt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53492457 |
taaggggacatcgtgacttgcctttgaaactcaatcaatggtgcaatgttgttagatgggtggtcggagatcccacaccattcatcaggtactttctttt |
53492358 |
T |
|
| Q |
209 |
ttaccatgttttcctttttccatgttataacaatgtgttggctgctgtaacgtaatgaaaactttcaagctttatataagaggcttaaacaattccaaaa |
308 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53492357 |
ttaccatcttttcctttttccatgttataacaatgtgttggctgctgtaacgtaatgaaaactttcaagctttatataagaggcttaaacaattccaaaa |
53492258 |
T |
|
| Q |
309 |
attgatattatgcattgtagttatatgtcttacataatgccttaaaattctgcccattttctttttgaatggattttcatcttacggtgagttttctttt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53492257 |
attgatattatgcattgtagttatatgtcttacataatgccttaaaattctgcccattttctttttgaatggattttcatcttacggtgagttttctttt |
53492158 |
T |
|
| Q |
409 |
tgaatgggtgttcaccttgtttgggtttggtgaattagtcttggatattgtttttatcatgcacatctactttatattggaacttgtttatagtcccatt |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53492157 |
tgaatgggtgttcaccttgtttgggtttggtgaattagtcttggatattgtttttatcatgcacatctactttatattggaacttgtttatagtcccatt |
53492058 |
T |
|
| Q |
509 |
ttagggtgcttattcaaattttgattgcaggagtcgtgagttcctttggcaagaaggtcacagtgcttttgcaacagaggatgaagcacatgcagaggta |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53492057 |
ttagggtgcttattcaaattttgattgcaggagtcgtgagttcctttggcaagaaggtcacagtgcttttgcaacagaggatgaagcacatgcagaggta |
53491958 |
T |
|
| Q |
609 |
ttccgtc---tagttattttaggaatctgccttaatatatgcatctttggcatctgtaatgagtatttgaggcctttcctcctgttcaattttcctaggc |
705 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53491957 |
ttccgtcaagtagttattttaggaatctgccttaatatatgcatctttggcatctgtaatgagtatttgaggcctttcctcctgttcaattttcctaggc |
53491858 |
T |
|
| Q |
706 |
atttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaagatatgaag |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53491857 |
atttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaagatatgaag |
53491758 |
T |
|
| Q |
806 |
ggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaaggattcctcttat |
905 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53491757 |
ggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaaggattcctcttat |
53491658 |
T |
|
| Q |
906 |
gtacgattgcatttatattttttgtccgc-tttttaacagattggagcgacggtgatggttcat-gtgatgacaaggga-tggtgctacctcctaa |
998 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
53491657 |
gtacgattgcatttata-tttttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaa |
53491563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 9 - 382
Target Start/End: Complemental strand, 53500477 - 53500118
Alignment:
| Q |
9 |
gttgcttgggtaacaaagtctggacattctgatttggaagctcatcttgctcttcgtccaagtagtgaaactatcatgtatccctattactctaagtgga |
108 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53500477 |
gttgcttgggtaacaaagtctggacagtctgatttggaagctcatcttgctcttcgtccaagtagtgaaactatcatgtatccctattactctaagtgga |
53500378 |
T |
|
| Q |
109 |
taaggggacatcgtgacttgcctttgaaacttaatcaatggtgcaatgctgttagatgggtggtcggagatcccacaccattcatcaggtactttctttt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
53500377 |
taaggggacatcgtgacttgcctttgaaacttaatcaatggtgcaatgctgttagatgggtggtcggagatcccacaccgttcatcaggtactttttttt |
53500278 |
T |
|
| Q |
209 |
ttaccatgttttcctttttccatgttataacaatgtgttggctgctgtaacgtaatgaaaactttcaagctttatataagaggcttaaacaattccaaaa |
308 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||| || |||||||||| |||||||||||||| ||||| ||||| |||| |
|
|
| T |
53500277 |
ttaccatcttttcctttttccatgttataatgatgtgttggttgatgtaacgtaa-caaaactttcaagct-------------ttaaaaaattctaaaa |
53500192 |
T |
|
| Q |
309 |
attgatattatgcattgtagttatatgtcttacataatgccttaaaattctgcccattttctttttgaatggat |
382 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
53500191 |
attgatattatgcgttgtagttttatgtcttacataatgccttaaagttctgcacattttctttttgaatggat |
53500118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 688 - 998
Target Start/End: Complemental strand, 53499468 - 53499156
Alignment:
| Q |
688 |
tgttcaattttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggta |
787 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
53499468 |
tgttcagttttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgcttgggacaaaagtttgctgaaaagttcgaggta |
53499369 |
T |
|
| Q |
788 |
aaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaa |
887 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53499368 |
aaatttgaagataagaagggagagaaagcaatggtttggcagaactcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaa |
53499269 |
T |
|
| Q |
888 |
tggaaggattcctcttatgtacgattgcatttatattttttgtccgctt-tttaacagattggagcgacggtgatggttcat-gtgatgacaaggga-tg |
984 |
Q |
| |
|
|||||| | |||| ||||||||||||||||||||| |||| |||||||| |||||||||||||||| | ||||||||||||| | |||||||||||| || |
|
|
| T |
53499268 |
tggaagaactccttttatgtacgattgcatttata-ttttagtccgcttatttaacagattggagcaatggtgatggttcatggcgatgacaagggattg |
53499170 |
T |
|
| Q |
985 |
gtgctacctcctaa |
998 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
53499169 |
gtgctacctcctaa |
53499156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 16071672 - 16071454
Alignment:
| Q |
9 |
gttgcttgggtaacaaagtctggacattctgatttggaagctcatcttgctcttcgtccaagtagtgaaactatcatgtatccctattactctaagtgga |
108 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||| |||||||||| |||| || |||||||||||||||||||||| |
|
|
| T |
16071672 |
gttgcttgggtaacaaagtctggacagtctgatttggaaactcatcttgctgttcgtctaagtagtgaagctataatatatccctattactctaagtgga |
16071573 |
T |
|
| Q |
109 |
taaggggacatcgtgacttgcctttgaaacttaatcaatggtgcaatgctgttagatgggtggtcggagatcccacaccattcatcaggtac--tttctt |
206 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||| |||||| || ||| || |
|
|
| T |
16071572 |
taaggggacaccgcgacttgcctttgaaacttaatcaatggtgcaatgcggttagatgggtggttggagatcccataccattaatcaggcactttttttt |
16071473 |
T |
|
| Q |
207 |
ttttaccatgttttccttt |
225 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
16071472 |
ttttaccatgttttccttt |
16071454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 479 - 674
Target Start/End: Complemental strand, 53500085 - 53499888
Alignment:
| Q |
479 |
tttatattggaacttgtttatagtcccattttagggtgcttattcaaattttgattgcaggagtcgtgagttcctttggcaagaaggtcacagtgctttt |
578 |
Q |
| |
|
||||||||| |||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
53500085 |
tttatattgaaacttgttcatagtcccatttt-gggtgcttatacaaattttgattgcaggagtcgtgagtttctttggcaagaaggtcacggtgctttt |
53499987 |
T |
|
| Q |
579 |
gcaacagaggatgaagcacatgcagaggtattccgtc---tagttattttaggaatctgccttaatatatgcatctttggcatctgtaatgagtatttg |
674 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| |
|
|
| T |
53499986 |
gcaacagaggatgaagcacatgcagaggtattccatcaagtagttattttaggaatctgccttactatatgcatttttggcatctgtaatgagtctttg |
53499888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 688 - 874
Target Start/End: Complemental strand, 16070576 - 16070390
Alignment:
| Q |
688 |
tgttcaattttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggta |
787 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| |||| ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||| || |
|
|
| T |
16070576 |
tgttcaatttttctaggcttttattccaaacattggtcgtgggatacaaggtgcagctacccattgtttgggacaaaagtttgctgagaagtttgagata |
16070477 |
T |
|
| Q |
788 |
aaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtcta |
874 |
Q |
| |
|
|| |||||||||| ||||| ||||||| |||||||||||||||| |||||||| | |||||||||||||||||||||| |||||||| |
|
|
| T |
16070476 |
aactttgaagataagaaggtagagaaaacaatggtttggcagaactcatgggggttttctactcgaactgtaagctttcaatgtcta |
16070390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 453 - 656
Target Start/End: Complemental strand, 16071337 - 16071131
Alignment:
| Q |
453 |
atattgtttttatcatgcacatctactttatattggaacttg--tttatagtcccattttagggtgcttattcaaattttgattgcaggagtcgtgagtt |
550 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||| ||||||| | |||||| |||||| | | ||| |||||||||||||||||||||||||||| |
|
|
| T |
16071337 |
atattgtttttatcacgcacatctactttgtattagaacttgcatatatagtat-attttaagcag-ttagacaaattttgattgcaggagtcgtgagtt |
16071240 |
T |
|
| Q |
551 |
cctttggcaagaaggtcacagtgcttttgcaacagaggatgaagcacatgcagaggtattccgtc---tagttattttaggaatctgccttaatatatgc |
647 |
Q |
| |
|
|||||||||||||| |||||||||||||| | ||||| |||||| ||||||||||||||| || ||||| |||||||||| ||||||||||| ||| |
|
|
| T |
16071239 |
tctttggcaagaaggacacagtgcttttgcttctgaggaagaagcagatgcagaggtattccatcaagtagttgttttaggaatttgccttaatatttgc |
16071140 |
T |
|
| Q |
648 |
atctttggc |
656 |
Q |
| |
|
|| |||||| |
|
|
| T |
16071139 |
atatttggc |
16071131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 939 - 998
Target Start/End: Complemental strand, 16070303 - 16070242
Alignment:
| Q |
939 |
taacagattggagcgacggtgatggttcat-gtgatgacaaggga-tggtgctacctcctaa |
998 |
Q |
| |
|
||||||||||||| || ||||||||||||| |||||||||||||| |||||||||| ||||| |
|
|
| T |
16070303 |
taacagattggagtgatggtgatggttcatggtgatgacaagggattggtgctaccgcctaa |
16070242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 2e-42; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 45353518 - 45353706
Alignment:
| Q |
9 |
gttgcttgggtaacaaagtctggacattctgatttggaagctcatcttgctcttcgtccaagtagtgaaactatcatgtatccctattactctaagtgga |
108 |
Q |
| |
|
||||||||||| || || |||||| | |||||||| || || | ||||| ||||||||| |||||||||| | |||||||| || ||||||||||||| |
|
|
| T |
45353518 |
gttgcttgggtgaccaaatctggagaatctgatttagagattcctattgctattcgtccaactagtgaaactgttatgtatccttactactctaagtgga |
45353617 |
T |
|
| Q |
109 |
taaggggacatcgtgacttgcctttgaaacttaatcaatggtgcaatgctgttagatgggtggtcggagatcccacaccattcatcagg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| | || | |||||||||||||||||||| |
|
|
| T |
45353618 |
taaggggacatcgtgacttgcctttgaagcttaatcagtggtgcaatgttgttagatgggagttcagcaatcccacaccattcatcagg |
45353706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 697 - 865
Target Start/End: Original strand, 45354908 - 45355076
Alignment:
| Q |
697 |
ttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaa |
796 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||||||| ||||||| |||||| ||| ||| ||| |||| | |||| |
|
|
| T |
45354908 |
ttcctaggcatttattccaaacactggtcgtggtatacaaggtgcaacttctcattgtttgggacaaaattttgctaaaatgtttgagataaactatgaa |
45355007 |
T |
|
| Q |
797 |
gatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttt |
865 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||| || |||| |||| ||||||||||||||||||| |
|
|
| T |
45355008 |
aatgagaagggagagaaagcaatggtctggcagaactcgtgggcctatagtactcgaactgtaagcttt |
45355076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 456 - 612
Target Start/End: Original strand, 45354189 - 45354343
Alignment:
| Q |
456 |
ttgtttttatcatgcacatctactttatattggaacttgtttatagtcccattttagggtgcttattcaaattttgattgcaggagtcgtgagttccttt |
555 |
Q |
| |
|
|||||||||||||| |||| ||||| ||| || |||| | |||||||| |||| ||||| ||||| | |||||| ||||||||||||||||||| |||| |
|
|
| T |
45354189 |
ttgtttttatcatgtacatttacttcgtat-ggcacttttgtatagtcc-atttcagggtacttataccaattttaattgcaggagtcgtgagtttcttt |
45354286 |
T |
|
| Q |
556 |
ggcaagaaggtcacagtgcttttgcaacagaggatgaagcacatgcagaggtattcc |
612 |
Q |
| |
|
|||||||||| |||| ||||||||||||| |||| |||||| || |||||||||||| |
|
|
| T |
45354287 |
ggcaagaaggacacactgcttttgcaacaaaggaggaagcagatacagaggtattcc |
45354343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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