View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5814-Insertion-2 (Length: 909)

Name: NF5814-Insertion-2
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5814-Insertion-2
NF5814-Insertion-2
[»] chr6 (3 HSPs)
chr6 (8-898)||(21005490-21006383)
chr6 (69-441)||(20903234-20903606)
chr6 (69-443)||(20921838-20922206)
[»] chr1 (2 HSPs)
chr1 (69-450)||(41336383-41336764)
chr1 (447-550)||(41336427-41336527)
[»] scaffold0557 (8 HSPs)
scaffold0557 (196-443)||(5728-5981)
scaffold0557 (196-443)||(5071-5324)
scaffold0557 (69-166)||(5327-5424)
scaffold0557 (69-163)||(5628-5722)
scaffold0557 (488-550)||(5969-6031)
scaffold0557 (491-550)||(5885-5944)
scaffold0557 (584-624)||(5969-6009)
scaffold0557 (488-550)||(5021-5083)
[»] scaffold0115 (5 HSPs)
scaffold0115 (196-443)||(46924-47177)
scaffold0115 (196-386)||(47840-48039)
scaffold0115 (69-166)||(47180-47277)
scaffold0115 (584-624)||(46896-46936)
scaffold0115 (491-550)||(46961-47020)
[»] scaffold0442 (7 HSPs)
scaffold0442 (234-442)||(9160-9374)
scaffold0442 (196-443)||(8436-8689)
scaffold0442 (69-163)||(9043-9137)
scaffold0442 (69-123)||(8735-8789)
scaffold0442 (488-550)||(9363-9425)
scaffold0442 (491-550)||(9279-9338)
scaffold0442 (488-550)||(8386-8448)
[»] chr3 (1 HSPs)
chr3 (126-258)||(2589508-2589640)


Alignment Details
Target: chr6 (Bit Score: 818; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 818; E-Value: 0
Query Start/End: Original strand, 8 - 898
Target Start/End: Complemental strand, 21006383 - 21005490
Alignment:
Q  8 aatatattggtgcttattcccaaggtgtcgggtgctcagaccatggaagacgtccgaccatttgcattggaacattagctacttcagcattagacacttt 107  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||  ||||||    
T  21006383 aatatattggtgcttattcccaaggtgtcaggtgcttagaccatggaagacgtccgacctattgcattggaacattagctacttcagcattatgcacttt 21006284  T
Q  108 gtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatttgaggctgcatgttttggttaaatctgggagacgcaaccatgttc 207  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21006283 gtagtgatagtagctatttgcaaccccttgttggccataaaaactttggtccatttgaggctgcatgttttggttaaatctgggagacgcaaccatgttc 21006184  T
Q  208 ataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgttag 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21006183 ataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgttag 21006084  T
Q  308 aattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttttattgacatt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  21006083 aattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcaggatagatttgacgctgcatgttttgattgacatt 21005984  T
Q  408 gtgatttggaatcatagtactcgtgttgttcttctctggttgatcaacaccaggatgtggaatcatcgtactcttgagggtgttgttcttgttttgttga 507  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21005983 gtgatttggaatcatagtactcatgttgttcttctctggttgatcaacaccaggatgtggaatcatcgtactcttgagggtgttgttcttgttttgttga 21005884  T
Q  508 acacttgcatggtagatttgaggctgcatgttttgattcacactactaggagttgaaaccatagcaatcatgacggtgttgttcttctcctgttgaacac 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21005883 acacttgcatggtagatttgaggctgcatgttttgattcacactactaggagttgaaaccatagcaatcatgacggtgttattcttctcctgttgaacac 21005784  T
Q  608 ttgcaggatagatttgaggcttaaagttttggataacaacaagaggagttggaataatgttggcaggtgaaataacattcatgtttgtgtttttattcac 707  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21005783 ttgcagggtagatttgaggcttaaagttttggataacaacaagaggagttggaataatgttggcaggtgaaataacattcatgtttgtgtttttattcac 21005684  T
Q  708 acaaccatttgatcaacatgtattgaatagacctttccgtcgatgtgggagtatttctaatgtcccttttcttagtggccaggggttatgagagttttag 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21005683 acaaccatttgatcaacatgtattgaatagacctttccgtcgatgtgggagtatttctaatgtcccttttcttagtggccaggggttatgagagttttag 21005584  T
Q  808 atttgaagg-tttgtaatctcactattagtgtttctaactatacaacgcat-gggataacttcattg-aagaattcacgttaagtacgatgtat 898  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  21005583 atttgaaggttttgtaatctcactattagtgtttctaactatacaacgcatggggataacttcattgaaagaattcacgttaagtacgatgtat 21005490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 69 - 441
Target Start/End: Complemental strand, 20903606 - 20903234
Alignment:
Q  69 ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatttgaggc 168  Q
    |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||  || | ||||||||||  |||| ||| |||| ||||||||| ||    
T  20903606 ttgcattggaacattagctacttcagtattaggcactttgcagtgatagtagctatttggacccccttgttgcgcatagaaattttgatccatttgatgc 20903507  T
Q  169 tgcatgttttggttaaatctgggagacgcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttctt 268  Q
    |||||||||||||||||||  ||||  |||||||||||||||||||| |||| ||||||||||| || ||||||||||||| |||||||| |||||| ||    
T  20903506 tgcatgttttggttaaatcctggagttgcaaccatgttcataactggcattggagtactcatcattgtagtattcatcatggtgttgctcttctgttgtt 20903407  T
Q  269 gatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacact 368  Q
    ||||||||||||||||||| |||||||| |||| |||   |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20903406 gatgaacacttgaagtgtagacttgaggatgcaagttttgattaacaccaggagttggaaccatagtactcatgatggtgttcttgttctgttgaacact 20903307  T
Q  369 ttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtactcgtgttgttcttc 441  Q
    | | |  ||||||||| | |||||| ||| ||| |||   ||||||||||||||||||||| |||||||||||    
T  20903306 tccggtgtagatttgatgttgcatgctttgattaacaccctgatttggaatcatagtactcatgttgttcttc 20903234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 69 - 443
Target Start/End: Complemental strand, 20922206 - 20921838
Alignment:
Q  69 ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatttgaggc 168  Q
    ||||||||||||||||||||||||||||| |  ||||||| | ||||| ||||||  |||| ||||||||||  |||| ||| |||| ||||||||| ||    
T  20922206 ttgcattggaacattagctacttcagcatcacgcactttgcaatgataatagctatttgcacccccttgttgcgcatagaaattttgatccatttgatgc 20922107  T
Q  169 tgcatgttttggttaaatctgggagacgcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttctt 268  Q
    ||||||||||||||||||| |||||  |||||||||||||||||||| |||||| ||||||||| ||| |||||||||||| |||| ||| |||||| ||    
T  20922106 tgcatgttttggttaaatccgggagtggcaaccatgttcataactggcattgaattactcatcattgaggtattcatcatggtgtttctcttctgttgtt 20922007  T
Q  269 gatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacact 368  Q
    ||||||||||||||||||| || ||||| ||||      | || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20922006 gatgaacacttgaagtgtagacctgaggatgca------agtttacactaggagttggaaccatagtactcatgatggtgttcttgttctgttgaacact 20921913  T
Q  369 ttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtactcgtgttgttcttctc 443  Q
    | |||  ||||||||||| |||||| ||| ||||| |  |||||||||||||||||||||| |||||||||||||    
T  20921912 tccagtgtagatttgacgatgcatgctttgattgataccgtgatttggaatcatagtactcatgttgttcttctc 20921838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 69 - 450
Target Start/End: Complemental strand, 41336764 - 41336383
Alignment:
Q  69 ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatttgaggc 168  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||| |||||| ||||| ||||||||||  |||| ||| |||| ||||||||| ||    
T  41336764 ttgcattggaacattagctacttcagcattacgcactttgtagttataatagctatctgcacccccttgttgcgcatagaaattttgatccatttgatgc 41336665  T
Q  169 tgcatgttttggttaaatctgggagacgcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttctt 268  Q
    ||||||||||||||||||  |||||  |||||||||||||||||||| |||||| ||||||||| ||| |||||||||||| |||||||| |||||| ||    
T  41336664 tgcatgttttggttaaatacgggagttgcaaccatgttcataactggcattgaattactcatcattgaggtattcatcatggtgttgctcttctgttgtt 41336565  T
Q  269 gatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacact 368  Q
    ||||||||||||||||||| |||||||| |||| |||   |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41336564 gatgaacacttgaagtgtagacttgaggatgcaagttttgattaacaccaggagttggaaccatagtactcatgatggtgttcttgttctgttgaacact 41336465  T
Q  369 ttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtactcgtgttgttcttctctggttga 450  Q
    | |||  ||||||||||| |||||| ||| |||||||  |||||||||||||||||||||| ||||||||||||||||||||    
T  41336464 tccagtgtagatttgacgatgcatgctttgattgacaccgtgatttggaatcatagtactcatgttgttcttctctggttga 41336383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 447 - 550
Target Start/End: Complemental strand, 41336527 - 41336427
Alignment:
Q  447 ttgatcaacaccaggatgtggaatcatcgtactcttgagggtgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattc 546  Q
    ||||| ||||||||||  ||||| ||| |||||| ||| ||||||   |||||| |||||||||||| ||  |||||||||| | |||||| |||||||     
T  41336527 ttgattaacaccaggagttggaaccatagtactcatgatggtgtt---cttgttctgttgaacacttccagtgtagatttgacgatgcatgctttgattg 41336431  T
Q  547 acac 550  Q
    ||||    
T  41336430 acac 41336427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557 (Bit Score: 123; Significance: 1e-62; HSPs: 8)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 196 - 443
Target Start/End: Original strand, 5728 - 5981
Alignment:
Q  196 gcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgag 295  Q
    |||||||||||||||||| | ||| |||||||||||  |||||||||||||||| |||||||| |||||| ||||| ||||||||||||||| ||||||     
T  5728 gcaaccatgttcataacttgcattaaagtactcatcgttgaagtattcatcatggtgttgctcttctgttgttgattaacacttgaagtgtagacttgaa 5827  T
Q  296 gttg------catgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctg 389  Q
      ||      ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||| ||    
T  5828 actgaatgtgcatgttttgattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacacttccagggtagatttgacgttg 5927  T
Q  390 catgtttttattgacattgtgatttggaatcatagtactcgtgttgttcttctc 443  Q
    |||| ||| ||| |||  || ||||||||||||||||||| |||||||||||||    
T  5928 catgctttgattaacaccgtaatttggaatcatagtactcatgttgttcttctc 5981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557; HSP #2
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 196 - 443
Target Start/End: Complemental strand, 5324 - 5071
Alignment:
Q  196 gcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgag 295  Q
    |||||||||||| ||||||| ||| ||| |||||||| |||||||||||||||| |||||||| |||||| ||||| ||||||||||||||| |||||||    
T  5324 gcaaccatgttcgtaactggcattaaagcactcatcattgaagtattcatcatggtgttgctcttctgttgttgattaacacttgaagtgtagacttgag 5225  T
Q  296 gt------tgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctg 389  Q
            ||||||||   ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||  ||  |||||||||||||     
T  5224 acagcacgtgcatgttttcattaacacttggagttggaaccatagtactcacgatggtgttcttgttttgttgaacacttctagggtagatttgacgcta 5125  T
Q  390 catgtttttattgacattgtgatttggaatcatagtactcgtgttgttcttctc 443  Q
    |||| ||| ||| ||| |||||||| ||||||||||| || |||||||||||||    
T  5124 catgctttaattaacactgtgatttagaatcatagtattcatgttgttcttctc 5071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 5424 - 5327
Alignment:
Q  69 ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatttgag 166  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||| | |||||||||||| | ||| |||| ||||||||||    
T  5424 ttgcattggaacattagctacttcagcattaggcactttgtagtgatagtagctatttgcatcaccttgttggccaaataaattttgatccatttgag 5327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 5628 - 5722
Alignment:
Q  69 ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccattt 163  Q
    |||||||||||| |||||||||||| |||||| ||||||||||||||||||||||  | || | |||||||||||| | ||| ||||||||||||    
T  5628 ttgcattggaaccttagctacttcaccattaggcactttgtagtgatagtagctatttccatcaccttgttggccaaagaaattttggtccattt 5722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 488 - 550
Target Start/End: Original strand, 5969 - 6031
Alignment:
Q  488 tgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac 550  Q
    |||||||||| |  ||||||||||||||||||||||||||| | |||||||||||||| ||||    
T  5969 tgttgttcttctcctgttgaacacttgcatggtagatttgatggtgcatgttttgattaacac 6031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 491 - 550
Target Start/End: Original strand, 5885 - 5944
Alignment:
Q  491 tgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac 550  Q
    ||||||||||||||||||||||| || ||||||||||| | |||||| ||||||| ||||    
T  5885 tgttcttgttttgttgaacacttccagggtagatttgacgttgcatgctttgattaacac 5944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 584 - 624
Target Start/End: Original strand, 5969 - 6009
Alignment:
Q  584 tgttgttcttctcctgttgaacacttgcaggatagatttga 624  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  5969 tgttgttcttctcctgttgaacacttgcatggtagatttga 6009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 488 - 550
Target Start/End: Complemental strand, 5083 - 5021
Alignment:
Q  488 tgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac 550  Q
    |||||||||| |  |||||||||||| ||| |||||||||| | |||||||||||||| ||||    
T  5083 tgttgttcttctcatgttgaacactttcattgtagatttgatggtgcatgttttgattaacac 5021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 107; Significance: 4e-53; HSPs: 5)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 196 - 443
Target Start/End: Complemental strand, 47177 - 46924
Alignment:
Q  196 gcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgag 295  Q
    |||||||||||||||||||| ||| |||||||||||  |||||||||||||||| |||| ||  |||||| ||||| || |||||||||||| |||||||    
T  47177 gcaaccatgttcataactggcattaaagtactcatcgttgaagtattcatcatggtgttactgttctgttgttgattaaaacttgaagtgtagacttgag 47078  T
Q  296 gttgcatgt------tagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctg 389  Q
      |||||||      |   |||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| |||  ||||||||||| ||    
T  47077 actgcatgtgcatgttttgattaacactaggagttggaaccatagtactcacgatgatgttcttgtattgttgaacacttccagggtagatttgacgttg 46978  T
Q  390 catgtttttattgacattgtgatttggaatcatagtactcgtgttgttcttctc 443  Q
    |||| ||| ||| |||  ||||||||||||||| |||||| |||||||||||||    
T  46977 catgctttgattaacaccgtgatttggaatcatggtactcatgttgttcttctc 46924  T

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Target: scaffold0115; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 196 - 386
Target Start/End: Original strand, 47840 - 48039
Alignment:
Q  196 gcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgag 295  Q
    |||||||||||||||||||| ||| ||||| |||||  |||||||||||||||| |||||||| |||||| ||||| ||||||||||| ||| |||||||    
T  47840 gcaaccatgttcataactggcattaaagtaatcatcgttgaagtattcatcatggtgttgctcttctgttgttgattaacacttgaagcgtagacttgag 47939  T
Q  296 ---------gttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacg 386  Q
               ||||||||   ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||   |||||||||||    
T  47940 actgctgcatgtgcatgttttgattaacactaggagttggaaccataatactcacgatggtgttcttgttttgttgaacacttacaagctagatttgacg 48039  T

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Target: scaffold0115; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 47277 - 47180
Alignment:
Q  69 ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatttgag 166  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||  ||||||  |  | | |||||||||||||  ||| |||||||||||||||    
T  47277 ttgcattggaacattagctacttcagcattaggcactttgtagtgattatagctatttttatcaccttgttggccattgaaattttggtccatttgag 47180  T

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Target: scaffold0115; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 584 - 624
Target Start/End: Complemental strand, 46936 - 46896
Alignment:
Q  584 tgttgttcttctcctgttgaacacttgcaggatagatttga 624  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  46936 tgttgttcttctcctgttgaacacttgcatggtagatttga 46896  T

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Target: scaffold0115; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 550
Target Start/End: Complemental strand, 47020 - 46961
Alignment:
Q  491 tgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac 550  Q
    ||||||||| ||||||||||||| || ||||||||||| | |||||| ||||||| ||||    
T  47020 tgttcttgtattgttgaacacttccagggtagatttgacgttgcatgctttgattaacac 46961  T

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Target: scaffold0442 (Bit Score: 104; Significance: 2e-51; HSPs: 7)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 234 - 442
Target Start/End: Original strand, 9160 - 9374
Alignment:
Q  234 tgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgt------tagaattaacactaggagttgga 327  Q
    |||||||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||||   |||||||      |   |||||||||||||||||||    
T  9160 tgaagtattcatcatggtgttgctcttctgttcttgattaacacttgaagtgtagacttgaaactgcatgtgcatgttttgattaacactaggagttgga 9259  T
Q  328 accatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtac 427  Q
    |||||||||||||||||||||||||||||||||||||||||| |||  ||||||||| | |||||| ||| ||| |||  || |||||||||||||||||    
T  9260 accatagtactcatgatggtgttcttgttttgttgaacacttccagggtagatttgaagttgcatgctttgattaacaccgtaatttggaatcatagtac 9359  T
Q  428 tcgtgttgttcttct 442  Q
    || ||||||||||||    
T  9360 tcatgttgttcttct 9374  T

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Target: scaffold0442; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 196 - 443
Target Start/End: Complemental strand, 8689 - 8436
Alignment:
Q  196 gcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgag 295  Q
    |||||||||||||||||||| ||| |   |||||||  |||||||||||||||| | |||||| | |||| ||||| ||||||||| ||||| |||||||    
T  8689 gcaaccatgttcataactggcattaatacactcatcgttgaagtattcatcatggttttgctcttttgttgttgattaacacttgaggtgtagacttgag 8590  T
Q  296 gttgcatgt------tagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctg 389  Q
      |||||||      |   ||| |||||||||||| |||||||||||||||  |||||||||||||||||||||||||||  ||  | ||||||||| ||    
T  8589 actgcatgtgcatgttttgatttacactaggagtttgaaccatagtactcacaatggtgttcttgttttgttgaacacttctagggttgatttgacgttg 8490  T
Q  390 catgtttttattgacattgtgatttggaatcatagtactcgtgttgttcttctc 443  Q
    |||| ||| ||| |||  ||||||| ||||||||||| || |||||||||||||    
T  8489 catgctttaattaacaccgtgatttagaatcatagtattcatgttgttcttctc 8436  T

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Target: scaffold0442; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 9043 - 9137
Alignment:
Q  69 ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccattt 163  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||  |||| | |||||||||||| | ||| ||||||||||||    
T  9043 ttgcattggaacattagctacttcaacattaggcactttgtagtgatagtagctatttgcatcaccttgttggccaaagaaattttggtccattt 9137  T

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Target: scaffold0442; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 8789 - 8735
Alignment:
Q  69 ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagcta 123  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  8789 ttgcattggaacattagctacttcaacattaggcactttgtagtgatagtagcta 8735  T

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Target: scaffold0442; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 488 - 550
Target Start/End: Original strand, 9363 - 9425
Alignment:
Q  488 tgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac 550  Q
    |||||||||| |  ||||||||||||||||||||||||||| | |||||||||||||| ||||    
T  9363 tgttgttcttctactgttgaacacttgcatggtagatttgatggtgcatgttttgattaacac 9425  T

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Target: scaffold0442; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 491 - 550
Target Start/End: Original strand, 9279 - 9338
Alignment:
Q  491 tgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac 550  Q
    ||||||||||||||||||||||| || ||||||||||| | |||||| ||||||| ||||    
T  9279 tgttcttgttttgttgaacacttccagggtagatttgaagttgcatgctttgattaacac 9338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 488 - 550
Target Start/End: Complemental strand, 8448 - 8386
Alignment:
Q  488 tgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac 550  Q
    |||||||||| |  ||||||||||||  ||||||||||||| | |||||||||||||| ||||    
T  8448 tgttgttcttctcatgttgaacacttttatggtagatttgatggtgcatgttttgattaacac 8386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 258
Target Start/End: Complemental strand, 2589640 - 2589508
Alignment:
Q  126 tgcaaccccttgttggccataaaaactttggtccatttgaggctgcatgttttggttaaatctgggagacgcaaccatgttcataactggtattgaagta 225  Q
    |||| ||||||||||  |||| ||| | || ||||||||||| |||||||||||||||||||  ||||  | || ||||||  ||||||| |  ||||||    
T  2589640 tgcatccccttgttgatcatagaaattctgctccatttgaggttgcatgttttggttaaatccaggagtaggaatcatgttgctaactggcaaagaagta 2589541  T
Q  226 ctcatcaatgaagtattcatcatgttgttgctc 258  Q
    || ||||  ||||||||||||||| || |||||    
T  2589540 cttatcatggaagtattcatcatggtgctgctc 2589508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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