View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5814-Insertion-3 (Length: 721)

Name: NF5814-Insertion-3
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5814-Insertion-3
NF5814-Insertion-3
[»] chr6 (6 HSPs)
chr6 (88-721)||(24947311-24947942)
chr6 (9-87)||(24947971-24948048)
chr6 (575-638)||(24954178-24954241)
chr6 (148-206)||(24955279-24955336)
chr6 (437-488)||(12664505-12664556)
chr6 (660-705)||(24954070-24954115)
[»] chr1 (2 HSPs)
chr1 (402-492)||(29552563-29552653)
chr1 (421-492)||(42738900-42738971)
[»] chr2 (2 HSPs)
chr2 (421-485)||(38398107-38398171)
chr2 (398-492)||(44189661-44189754)
[»] chr5 (1 HSPs)
chr5 (421-492)||(17174060-17174131)
[»] chr7 (1 HSPs)
chr7 (402-477)||(37219616-37219691)


Alignment Details
Target: chr6 (Bit Score: 543; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 88 - 721
Target Start/End: Complemental strand, 24947942 - 24947311
Alignment:
Q  88 acgttccattataatcaactgctcataggtatttcaatggttagtaatatatatttccttaattcacaagacttaaattcgaactcaatatcagagacat 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24947942 acgttccattataatcaactgctcataggtatttcaatggttagtaatatatatttccttaattcacaagacttaaattcgaactcaatatcagagacat 24947843  T
Q  188 atgttccattttaatcaacagctcttgtggtatatatttccttaatttaattatataaatagcttactttttatgaccgtaagtagttctannnnnnnca 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  24947842 atgttccattttaatcaacagctcttgtggtatatatttccttaatttaattatataaatagcttactttttatgaccgtaagtagttctatttttttca 24947743  T
Q  288 aaagaccaaagaatgatatattaacaaacaaggttaccttggtgtactgaaa------actacgcaccaaaataacagaaacatacacaatcgagtttac 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||| ||        ||    
T  24947742 aaagaccaaagaatgatatattaacaaacaaggttaccttggtgtactgaaagtgaaaactacgcaccaaaataacagaaacatacagaa--------ac 24947651  T
Q  382 tgtacaaacagcagaaacacaaacagacaatactaaataacagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtga 481  Q
     | | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24947650 agcagaaacagcagaaacacagacagacaatactaaataacagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtga 24947551  T
Q  482 catatttcgaccggaagtagttctatttaatgaaacgaaattcagcatatgtgaatgggatattaggatccatccttttctatttaacaagagattgtta 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24947550 catatttcgaccggaagtagttctatttaatgaaacgaaattcagcatatgtgaatgggatattaggatccatccttttctatttaacatgagattgtta 24947451  T
Q  582 ctaagcaaccgttaaaaaattgagagaaagcatgcaattcaaacttaataacaaagatgcaaatgttgtactatcttcctttcaaattatataccagcta 681  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24947450 ctaagcaaccgttaaaaaattgagagaaagcatgcaattcaaacttaataacaaagatgcaaatgttgtactatcttcctttcaaattatataccagcta 24947351  T
Q  682 cctttactaaatcattgataaatatgcaactggcacttga 721  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24947350 cctttactaaatcattgataaatatgcaactggcacttga 24947311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 24948048 - 24947971
Alignment:
Q  9 ttccccgcacatatatagagaataatcatttgagtcgacgaagaaagtggt-aaaacaatattttttgagttttaacaat 87  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||    
T  24948048 ttccccgcacatttatagagaataatcatttgagtcgacgaagaaagtggtaaaaacaata--ttttgagttttaacaat 24947971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 575 - 638
Target Start/End: Complemental strand, 24954241 - 24954178
Alignment:
Q  575 attgttactaagcaaccgttaaaaaattgagagaaagcatgcaattcaaacttaataacaaaga 638  Q
    |||| |||||||||||| |||||||  | | |||||||||||||||||||||||||||||||||    
T  24954241 attgctactaagcaacccttaaaaatctaacagaaagcatgcaattcaaacttaataacaaaga 24954178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 24955336 - 24955279
Alignment:
Q  148 aattcacaagacttaaattcgaactcaatatcagagacatatgttccattttaatcaac 206  Q
    |||||||||||||||||||| |||||||||||| ||| | |||||| ||||||||||||    
T  24955336 aattcacaagacttaaattctaactcaatatca-agagacatgttcaattttaatcaac 24955279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 437 - 488
Target Start/End: Original strand, 12664505 - 12664556
Alignment:
Q  437 aaataggattaagcctccgaaattggtaatcataatcgaaagtgacatattt 488  Q
    |||| |||||||||| || ||||||||||||||||||||| || ||||||||    
T  12664505 aaatgggattaagccaccaaaattggtaatcataatcgaatgtaacatattt 12664556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 705
Target Start/End: Complemental strand, 24954115 - 24954070
Alignment:
Q  660 ctttcaaattatataccagctacctttactaaatcattgataaata 705  Q
    |||||||||| ||| |||||||||||| || |||||||||||||||    
T  24954115 ctttcaaattgtattccagctaccttttctgaatcattgataaata 24954070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 402 - 492
Target Start/End: Original strand, 29552563 - 29552653
Alignment:
Q  402 aaacagacaatactaaataacagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtgacatatttcgac 492  Q
    ||||| |||| ||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  29552563 aaacaaacaacactaaataacagtagaaaaatacaaaataggattaagcctccaaaattggtaatcataatcgaaagcaacatatttcgac 29552653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 421 - 492
Target Start/End: Complemental strand, 42738971 - 42738900
Alignment:
Q  421 acagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtgacatatttcgac 492  Q
    |||||||||| ||| |||||| ||||||| || | |||||||||||||||||||||||| | ||||||||||    
T  42738971 acagctgaaacacagaaaataagattaagtcttcaaaattggtaatcataatcgaaagtaatatatttcgac 42738900  T

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Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 421 - 485
Target Start/End: Complemental strand, 38398171 - 38398107
Alignment:
Q  421 acagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtgacata 485  Q
    |||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||||    
T  38398171 acagttgaaacacacataataggattaagcctccaaaattggtaatcataatcgaaagtaacata 38398107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 398 - 492
Target Start/End: Original strand, 44189661 - 44189754
Alignment:
Q  398 acacaaacagacaatactaaataacagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtgacatatttcgac 492  Q
    ||||| |||||||| |||| || ||||| ||||||||||||||| ||||||| |||  |||||||| |||| |||||||||| ||||||||||||    
T  44189661 acacacacagacaacactagatgacagcagaaaaacacaaaataagattaagtctctaaaattggt-atcacaatcgaaagtaacatatttcgac 44189754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 421 - 492
Target Start/End: Complemental strand, 17174131 - 17174060
Alignment:
Q  421 acagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtgacatatttcgac 492  Q
    |||| ||||| ||| ||||||||||||||||||| |||||| ||||||||||||||||| | ||||||||||    
T  17174131 acagttgaaacacataaaataggattaagcctccaaaattgataatcataatcgaaagtaatatatttcgac 17174060  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 402 - 477
Target Start/End: Original strand, 37219616 - 37219691
Alignment:
Q  402 aaacagacaatactaaataacagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaa 477  Q
    ||||| |||| |||||||||||   || |||||||||||||||||||||||   ||||||||||||||||||||||    
T  37219616 aaacaaacaacactaaataacactagagaaacacaaaataggattaagcctaaaaaattggtaatcataatcgaaa 37219691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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