View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814-Insertion-4 (Length: 608)
Name: NF5814-Insertion-4
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814-Insertion-4 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 524; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 8 - 608
Target Start/End: Original strand, 26733113 - 26733718
Alignment:
| Q |
8 |
acttgaaacatagaatcaatgccttcaccttttcacgagcaacaactttctcaaatacaaagttccaattcttccacgtaaaacaccttttcttctctcc |
107 |
Q |
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| T |
26733113 |
acttgaaacatagaatcaatgccttcaccttttcacgagcaacaactttctcaaatacaaagttccaattcttccacgtaaaacaccttttcttctctcc |
26733212 |
T |
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| Q |
108 |
agtttcnnnnnnnaatttggaaaaatacataaatcaactttggtttcattctaaagtgtgtcttttacaaagaattgcatctttgttacaaaagtaaatt |
207 |
Q |
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| T |
26733213 |
agtttctttttttaatttggaaaaatacataaatcaactttggtttcattccaaagtgtgtcttttacaaagaattgcatctttgttacaaaagtaaatt |
26733312 |
T |
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| Q |
208 |
aagtctactcgtggacttaactagtgggaaataggatattacacaaagattatactccactctaccatatattaaccaataagataacatcaattaaatc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26733313 |
aagtctactcgtggacttaactagtgggaaataggatattacacaaagattatactccactctaccatatgttaaccaataagataacatcaattaaatt |
26733412 |
T |
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| Q |
308 |
aactataattgtacttattataaatacagaatgcaatcactgcatgtagtgtga-----gtgtggtaccaaaaagagaaattaaatacacccaatgcaaa |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26733413 |
aactataattgtacttattataaatacagaatgcaatcactgcatgtagtgtgagagtggtgtggtaccaaaaagagaaattaaatacacccaatgcaaa |
26733512 |
T |
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| Q |
403 |
cattgcaaaccaattcataggtacaaaactgagcaaaagagaaagatgaaaagcatcacatgttatttgctactattgtgcatgttatttacaacgtgtt |
502 |
Q |
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| T |
26733513 |
cattgcaaaccaattcataggtacaaaactgagcaaaagagaaagatgaaaaacatcacatgttatttgctactattgtgcatgttatttacaacgtgtt |
26733612 |
T |
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| Q |
503 |
attcattaaataatgatcttgatgcgttgctaaagctnnnnnnntcaatgaaaggaaagaaagccaaagatgatgcactcaaagactggaaattttcaac |
602 |
Q |
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| T |
26733613 |
attcattaaataatgatcttgatgcgttgctaaagctaaaaaaatcaatgaaaggagagaaagccaaagatgatgcactcaaagactggaaattttcaac |
26733712 |
T |
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| Q |
603 |
ttctgc |
608 |
Q |
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|||||| |
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| T |
26733713 |
ttctgc |
26733718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 262 - 608
Target Start/End: Original strand, 26725058 - 26725404
Alignment:
| Q |
262 |
ctccactctaccatatattaaccaataagataacatcaattaaatcaactataattgtacttattataaatacagaatgcaatcactgcatgtagtgtga |
361 |
Q |
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| T |
26725058 |
ctccactccaccatatgtgaacaaataagataatatcaattaaattaactataattgtacttattataaatatagaatgcaatcactgcatgtagtgtga |
26725157 |
T |
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| Q |
362 |
gtgtggtaccaaaaagagaaattaaatacacccaatgcaaacattgcaaaccaattcataggtacaaaactgagcaaaagagaaagatgaaaagcatcac |
461 |
Q |
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| T |
26725158 |
gtgtggtaccaaaaagagaaattaaatacacccaatgcaaacattgcaaaccaattcataggtacaaaacttagcaaaagagaaagatgaaaagcatcac |
26725257 |
T |
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| Q |
462 |
atgttatttgctactattgtgcatgttatttacaacgtgttattcattaaataatgatcttgatgcgttgctaaagctnnnnnnntcaatgaaaggaaag |
561 |
Q |
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| T |
26725258 |
atgttatttgctactattgtgcatgttatttacaacgtgttattcattaaataatgatcttgatgcgttgctaaagctaaaaaaatcaatgaaaggagag |
26725357 |
T |
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| Q |
562 |
aaagccaaagatgatgcactcaaagactggaaattttcaacttctgc |
608 |
Q |
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| T |
26725358 |
aaagccaaagatgatgcactcaaagactggaaattttcaacttctgc |
26725404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 26724633 - 26724814
Alignment:
| Q |
8 |
acttgaaacatagaatcaatgccttcaccttttcacgagcaacaactttctcaaatacaaagttccaattcttccacgtaaaacaccttttcttctctcc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| || |
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| T |
26724633 |
acttgaaacatagaatcaatgccttcaccttttcacgagcaacaactttctcaaat-------tccaatttctc------aaacaccttttcttctcccc |
26724719 |
T |
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| Q |
108 |
agtttcnnnnnnnaatttggaaaaatacataaatcaactttggtttcattctaaagtgtgtcttttacaaagaattgcatctttgttacaaaagta |
203 |
Q |
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| T |
26724720 |
attttctttttt-aatttggcaaactacataaatcaactttggtttcattccaaagtgcgtctttaacaaagaattgcatctttgtcacaaaagta |
26724814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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