View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814-Insertion-6 (Length: 559)
Name: NF5814-Insertion-6
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814-Insertion-6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 9 - 450
Target Start/End: Original strand, 41459315 - 41459755
Alignment:
| Q |
9 |
acatattcctgtatttggttgcaggattataatgcaaagctttctgattttgggctggcaagggatggttcaacaggtgacaaaagtcacatcttcacca |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41459315 |
acatattcctgtatttggttgcaggattataatgcaaagctttctgattttgggctggcaagggatggtccaacaggtgacaaaagtcacatcttcacca |
41459414 |
T |
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| Q |
109 |
acacgttagtaggaaataatggatatgcagctcctgaatatgtagattcaggtattttccggttcatgttcccgaaccatatttttgtttcgcgtttctc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41459415 |
acacgttagtaggaaataatggatatgcagctcctgaatatgtagattcaggtattttccggttcatgttcccgaaccatatttttgtttcgcgtttctc |
41459514 |
T |
|
| Q |
209 |
cttttctgannnnnnnatgttattctagattcagcttagttgtcttgcttaagactaatttatctttattctttgcgagccttgaannnnnnncgagatt |
308 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41459515 |
cttttctgatttttttatgttattctagattcagcttagttgtcttgcttaagactaatttatctttattctttgcgagccttgaatttttttcgagatt |
41459614 |
T |
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| Q |
309 |
aaggttaatagctaaaaacattgttactgtaggtcttcttactacgaagagtgatgtctatagttttggagttgtcctgcttgaaatggtatgtggtagg |
408 |
Q |
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| T |
41459615 |
aaggttaatagctaaaaacattgttactgtaggtcttcttactacgaagagtgatgtctatagttttggagttgtcctgcttgaaatggtatgtggtagg |
41459714 |
T |
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| Q |
409 |
agggtaattgacaataataaaccatatggagaaacacaactt |
450 |
Q |
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| T |
41459715 |
agggtaattgacaataataaaccatatggag-aacacaactt |
41459755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 313 - 422
Target Start/End: Original strand, 41449177 - 41449286
Alignment:
| Q |
313 |
ttaatagctaaaaacattgttactgtaggtcttcttactacgaagagtgatgtctatagttttggagttgtcctgcttgaaatggtatgtggtaggaggg |
412 |
Q |
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| T |
41449177 |
ttaatagctaaaaacattgttactgtaggtcatcttactacgaagagtgatgtctatagttttggagttgtcctgcttgaaatggtatgtggtaggaggg |
41449276 |
T |
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| Q |
413 |
taattgacaa |
422 |
Q |
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|||||||||| |
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| T |
41449277 |
taattgacaa |
41449286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 311 - 438
Target Start/End: Original strand, 41442728 - 41442855
Alignment:
| Q |
311 |
ggttaatagctaaaaacattgttactgtaggtcttcttactacgaagagtgatgtctatagttttggagttgtcctgcttgaaatggtatgtggtaggag |
410 |
Q |
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||||||||||| |||||||||| |||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||| |||| ||| |
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| T |
41442728 |
ggttaatagctgaaaacattgtgactgtaggtcatcttactactaagagcgatgtctatagttttggagttgtcctgcttgaaatgttatccggtaagag |
41442827 |
T |
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| Q |
411 |
ggtaattgacaataataaaccatatgga |
438 |
Q |
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| T |
41442828 |
ggcagttgacaagaatagaccatctgga |
41442855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 41442537 - 41442679
Alignment:
| Q |
21 |
atttggttgcaggattataatgcaaagctttctgattttgggctggcaagggatggttcaacaggtgacaaaagtcacatcttcaccaacacgttagtag |
120 |
Q |
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| T |
41442537 |
atttgattgcaggattataatgcaaagctttctgatttcgggctggcaaaggatggtccaacaggtgacaaaagccacgtct---ccaccagggtaatgg |
41442633 |
T |
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| Q |
121 |
gaaataatggatatgcagctcctgaatatgtagattcaggtatttt |
166 |
Q |
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| T |
41442634 |
gaacctatggatatgcagctcctgaatatctagctacaggtatttt |
41442679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 500 - 559
Target Start/End: Complemental strand, 12019841 - 12019783
Alignment:
| Q |
500 |
ttcactcccttacaatgtcgatttaaatcccttggtacaagaagtcatccttgtaaaaaa |
559 |
Q |
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| T |
12019841 |
ttcactcccttacaatgtcaatttaaatcctttgg-acaagaagtcatccctgtaaaaaa |
12019783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 500 - 559
Target Start/End: Complemental strand, 11988374 - 11988316
Alignment:
| Q |
500 |
ttcactcccttacaatgtcgatttaaatcccttggtacaagaagtcatccttgtaaaaaa |
559 |
Q |
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| T |
11988374 |
ttcactcccttacaatgtcaatttaaatccttttg-acaagaagtcatccctgtaaaaaa |
11988316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 559
Target Start/End: Original strand, 9363715 - 9363772
Alignment:
| Q |
501 |
tcactcccttacaatgtcgatttaaatcccttggtacaagaagtcatccttgtaaaaaa |
559 |
Q |
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| T |
9363715 |
tcactcccttacaatgacaatttaaat-ccttgggacaagaagtcatccctgtgaaaaa |
9363772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 41448986 - 41449032
Alignment:
| Q |
62 |
gctggcaagggatggttcaacaggtgacaaaagtcacatcttcacca |
108 |
Q |
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| T |
41448986 |
gctggcaagggatggtccaacaggtgagaaaagtcacgtctccacca |
41449032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 470 - 559
Target Start/End: Complemental strand, 29449433 - 29449347
Alignment:
| Q |
470 |
ttttcagcttcacatcagtgggttcttcttttcactcccttacaatgtcgatttaaatcccttggtacaagaagtcatccttgtaaaaaa |
559 |
Q |
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| T |
29449433 |
ttttcagcttcacatcagtgg-ttcttcttt-cactcccttacaatgtcgatttaaatcc-ttggtacaagaagtcatccttgtaaaaaa |
29449347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 383
Target Start/End: Original strand, 23833135 - 23833163
Alignment:
| Q |
355 |
aagagtgatgtctatagttttggagttgt |
383 |
Q |
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| T |
23833135 |
aagagtgatgtctatagttttggagttgt |
23833163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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