View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5814-Insertion-7 (Length: 530)

Name: NF5814-Insertion-7
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5814-Insertion-7
NF5814-Insertion-7
[»] chr1 (8 HSPs)
chr1 (9-530)||(29449024-29449520)
chr1 (11-70)||(29462304-29462363)
chr1 (350-419)||(29457080-29457149)
chr1 (73-141)||(29462215-29462283)
chr1 (98-172)||(29444247-29444321)
chr1 (98-172)||(29454254-29454328)
chr1 (445-492)||(29456984-29457031)
chr1 (297-349)||(29461783-29461834)
[»] chr2 (7 HSPs)
chr2 (75-172)||(9363665-9363762)
chr2 (98-172)||(12019793-12019867)
chr2 (98-172)||(11988326-11988400)
chr2 (12-57)||(9363583-9363628)
chr2 (98-168)||(12007150-12007220)
chr2 (25-73)||(9069069-9069117)
chr2 (76-176)||(9287782-9287882)
[»] chr8 (1 HSPs)
chr8 (76-172)||(41968300-41968397)
[»] chr7 (1 HSPs)
chr7 (109-173)||(45242651-45242715)


Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 9 - 530
Target Start/End: Complemental strand, 29449520 - 29449024
Alignment:
Q  9 tccagaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaaccactagaaacaatttgagcattcgttttcagcttcac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449520 tccagaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaaccactagaaacaatttgagcattcgttttcagcttcac 29449421  T
Q  109 atcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatccttgtnnnnnnnnncacatgaatatcatataagtaaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||    
T  29449420 atcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatccttgt-aaaaaaaacacatgaatatcatataagtaaa 29449322  T
Q  209 ctcaacaaattagctagtcacgtgcatgggccgaatgtccatgtatcattgctcttatcaataataacctgccacgtcatgtacctatttctgttggatc 308  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  29449321 ctcaacaaattagctagtca----catgggccgaatgtccatgtatcattgctcttatcaataataacctgccacgtcatgtacctatttctg------- 29449233  T
Q  309 tataaaacaaccttgggcacaaagggatggcattcaaagtctacagcagaaaaggattaagagtccaccttatgatattacaacataaaacttaatttgt 408  Q
                |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449232 ------------ttgggcacaaagggatggcattcaaagtctacagcataaaaggattaagagtccaccttatgatattacaacataaaacttaatttgt 29449145  T
Q  409 agaaaaaatattcaagacatgattnnnnnnnngggcgtttttgtgtgaaaatgccttgtaggtttcttttgcaagtacatatttgtgaagtgtagtttct 508  Q
    ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449144 agaaaaaatattcaagacatgatt-aaaaaaagggcgtttttgtgtgaaaatgccttgtaggtttcttttgcaagtacatatttgtgaagtgtagtttct 29449046  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 29462363 - 29462304
Alignment:
Q  11 cagaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaa 70  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29462363 cagaagagagatacaaatgtgtggagctacattccttatcaattcaatccttcccacaaa 29462304  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 350 - 419
Target Start/End: Complemental strand, 29457149 - 29457080
Alignment:
Q  350 tacagcagaaaaggattaagagtccaccttatgatattacaacataaaacttaatttgtagaaaaaatat 419  Q
    ||||||||||||||| ||| ||||||| |||||||||||||||||||||| ||  |||||||||||||||    
T  29457149 tacagcagaaaaggaataatagtccacattatgatattacaacataaaacataccttgtagaaaaaatat 29457080  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 29462283 - 29462215
Alignment:
Q  73 actagaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgt 141  Q
    ||||||||||| ||||||||| | |||| ||| ||||||| |||||||||||||| |||||||||||||    
T  29462283 actagaaacaacttgagcatttggtttctgctacacatcattggttcttctttcattcccttacaatgt 29462215  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 29444321 - 29444247
Alignment:
Q  98 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 172  Q
    ||||||| | |||||  |||||||| |||||||||||||||| ||  ||||||||||||| ||||||||| ||||    
T  29444321 ttcagctacgcatcaaaggttcttccttcactcccttacaatttcagtttaaatccttgggacaagaagttatcc 29444247  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 29454328 - 29454254
Alignment:
Q  98 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 172  Q
    ||||||| |||||||  | |||||| |||||||| ||||||| || ||||||||||| || ||||||||||||||    
T  29454328 ttcagctacacatcaaagattcttccttcactccattacaatttcaatttaaatcctcgggacaagaagtcatcc 29454254  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 492
Target Start/End: Complemental strand, 29457031 - 29456984
Alignment:
Q  445 gtttttgtgtgaaaatgccttgtaggtttcttttgcaagtacatattt 492  Q
    |||||||||||||||| | ||||||||||||||||| |||||| ||||    
T  29457031 gtttttgtgtgaaaatactttgtaggtttcttttgcgagtacaaattt 29456984  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 29461834 - 29461783
Alignment:
Q  297 ttctgttggatctataaaacaaccttgggcacaaagggatggcattcaaagtc 349  Q
    |||| ||||||||||||||||||||| ||||| |||| |||||| ||||||||    
T  29461834 ttctattggatctataaaacaaccttaggcac-aaggaatggcagtcaaagtc 29461783  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 9363665 - 9363762
Alignment:
Q  75 tagaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 172  Q
    ||||||||| ||||| || ||  ||||||| ||||||  |||||||||| |||||||||||||||| | |||||||||||||| ||||||||||||||    
T  9363665 tagaaacaacttgagtatccggcttcagctacacatccctggttcttctatcactcccttacaatgacaatttaaatccttgggacaagaagtcatcc 9363762  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 12019867 - 12019793
Alignment:
Q  98 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 172  Q
    ||||||| |||||||  | |||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||    
T  12019867 ttcagctacacatcaacgattcttccttcactcccttacaatgtcaatttaaatcctttggacaagaagtcatcc 12019793  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 11988400 - 11988326
Alignment:
Q  98 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 172  Q
    ||||||| |||| ||  |||||||| ||||||||||||||||||| ||||||||||||   ||||||||||||||    
T  11988400 ttcagctacacaacaaaggttcttccttcactcccttacaatgtcaatttaaatccttttgacaagaagtcatcc 11988326  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 9363583 - 9363628
Alignment:
Q  12 agaagtgagatacaaatgggtggagctacattccttatcaattcaa 57  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  9363583 agaagagagatacaaatggatggagctacattccttatcaattcaa 9363628  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 12007220 - 12007150
Alignment:
Q  98 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtc 168  Q
    ||||||| ||||| |  |||||||| ||||||||||||||| ||| ||||||||||| || ||| ||||||    
T  12007220 ttcagctacacataacaggttcttccttcactcccttacaaggtcaatttaaatcctcgggacaggaagtc 12007150  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 9069117 - 9069069
Alignment:
Q  25 aaatgggtggagctacattccttatcaattcaatccttcccacaaacca 73  Q
    ||||||||| |||| ||||| |||||||||||| | |||||||||||||    
T  9069117 aaatgggtgcagcttcattctttatcaattcaacctttcccacaaacca 9069069  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 9287782 - 9287882
Alignment:
Q  76 agaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatccttg 175  Q
    |||||||| |||||||| |  |||||||| |||||||  ||| ||||  ||  ||||||||||| || ||||||||||| || |||| ||||| ||||||    
T  9287782 agaaacaacttgagcatcctgtttcagctgcacatcacaggtacttccatccatcccttacaatctcaatttaaatcctcgggacaaaaagtcgtccttg 9287881  T
Q  176 t 176  Q
    |    
T  9287882 t 9287882  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 41968397 - 41968300
Alignment:
Q  76 agaaacaatttgagcattc-gttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 172  Q
    |||||||| |||||||| | | |||||||| |||||||  ||| |||| |||  ||||||||||| || |||||||||||||| ||||||||||||||    
T  41968397 agaaacaacttgagcatcctggtttcagctgcacatcacaggtccttccttccatcccttacaatctcaatttaaatccttgggacaagaagtcatcc 41968300  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 45242651 - 45242715
Alignment:
Q  109 atcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcct 173  Q
    |||| ||||||||| ||  ||| ||| ||||||| |||||||||| ||| |||||||||||||||    
T  45242651 atcactggttcttccttggctctctttcaatgtcaatttaaatccctggaacaagaagtcatcct 45242715  T

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