View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814-Insertion-9 (Length: 434)
Name: NF5814-Insertion-9
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814-Insertion-9 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 408
Target Start/End: Original strand, 10707332 - 10707722
Alignment:
| Q |
9 |
taattaacttgtaatactgagaggtaaaataaatttgcagctaaaacttcaatgcaggtaaaatgcagtacagagtgataaaagtcacatgcatgaaaat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10707332 |
taattaacttgtaatactgagaggtaaaataaatttgcagctaaaacttcaatgcaggtaaaatgcagtacagagtgataaaagtcacatgcatgaaaat |
10707431 |
T |
|
| Q |
109 |
aagttcagaacaaaccttatctacagaggtcgtgctaggaatggacccctctgaagcaagattgccattggattctctgcttgtttcactgcttatcaaa |
208 |
Q |
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| T |
10707432 |
aagttcagaacaaaccttatctacagaggtcgtgctaggaatggacccctctgaagcaagattgccattggattctctgcttgtttcactgcttatcaag |
10707531 |
T |
|
| Q |
209 |
gtaagttgcttctgtagatccagaatatactcagcctgaacaatttacgaaaagaatttatttaaatgaggatgttggagnnnnnnnnnnnnnnnnnnnn |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10707532 |
gtaagttgcttctgtagatccagaatatactcagcctgaacaatttacgaaaagaatttatttaaatgaggatgttggag---------ataataataat |
10707622 |
T |
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| Q |
309 |
ngtttgaggtggtgacaaggacatgcaaacaggattctgtcaaaatcgttatatttgaatacaactttaagatacaaaaagctaactatattgttaattc |
408 |
Q |
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| T |
10707623 |
agtttgaggtggtgacaaggacatgcaaacaggattctgtcaaaatcgttatatttgaatacaactttaagatacaaaaagctaactatattgttaattc |
10707722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 9 - 408
Target Start/End: Complemental strand, 26651607 - 26651215
Alignment:
| Q |
9 |
taattaacttgtaatactgagaggtaaaataaatttgcagctaaaacttcaatgcaggtaaaatgcagtacagagtgataaaagtcac--atgcatgaaa |
106 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26651607 |
taattaacttgtaatactgagaagtaaaataaatttgaagctaaaacttcaatgcaggtaaaatgcagtacagagtgataaaagtcactgatgcatgaaa |
26651508 |
T |
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| Q |
107 |
ataagttcagaacaaaccttatctacagaggtcgtgctaggaatggacccctctgaagcaagattgccattggattctctgcttgtttcactgcttatca |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26651507 |
ttaagttcagaacaaaccttatctacagaggtcgtgctaggaatggacccctctgaagcaagattgccattggattctctccttgtttcactgcttatca |
26651408 |
T |
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| Q |
207 |
aagtaagttgcttctgtagatccagaatatactcagcctgaacaatttacgaaaagaatttatttaaatgaggatgttggagnnnnnnnnnnnnnnnnnn |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26651407 |
aagtaagttgcttctgtagatccagaatatactcagcctgaacaatttacgaaaaaaatttatttaaatgaggatgttggag---------ataataata |
26651317 |
T |
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| Q |
307 |
nnngtttgaggtggtgacaaggacatgcaaacaggattctgtcaaaatcgttatatttgaatacaactttaagatacaaaaagctaactatattgttaat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26651316 |
atagtttgaggtggtgacaaggacatgcaaacaggattctgtcaaaatcattatatttgaatacaactttaagatacaaaaagctaactatattgttaat |
26651217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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