View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5814_high_1 (Length: 747)

Name: NF5814_high_1
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5814_high_1
NF5814_high_1
[»] chr6 (6 HSPs)
chr6 (99-737)||(24947306-24947942)
chr6 (20-98)||(24947971-24948048)
chr6 (586-649)||(24954178-24954241)
chr6 (159-217)||(24955279-24955336)
chr6 (448-499)||(12664505-12664556)
chr6 (671-716)||(24954070-24954115)
[»] chr1 (2 HSPs)
chr1 (413-503)||(29552563-29552653)
chr1 (432-503)||(42738900-42738971)
[»] chr2 (2 HSPs)
chr2 (432-496)||(38398107-38398171)
chr2 (409-503)||(44189661-44189754)
[»] chr5 (1 HSPs)
chr5 (432-503)||(17174060-17174131)
[»] chr7 (1 HSPs)
chr7 (413-488)||(37219616-37219691)


Alignment Details
Target: chr6 (Bit Score: 548; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 99 - 737
Target Start/End: Complemental strand, 24947942 - 24947306
Alignment:
Q  99 acgttccattataatcaactgctcataggtatttcaatggttagtaatatatatttccttaattcacaagacttaaattcgaactcaatatcagagacat 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24947942 acgttccattataatcaactgctcataggtatttcaatggttagtaatatatatttccttaattcacaagacttaaattcgaactcaatatcagagacat 24947843  T
Q  199 atgttccattttaatcaacagctcttgtggtatatatttccttaatttaattatataaatagcttactttttatgaccgtaagtagttctannnnnnnca 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  24947842 atgttccattttaatcaacagctcttgtggtatatatttccttaatttaattatataaatagcttactttttatgaccgtaagtagttctatttttttca 24947743  T
Q  299 aaagaccaaagaatgatatattaacaaacaaggttaccttggtgtactgaaa------actacgcaccaaaataacagaaacatacacaatcgagtttac 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||| ||        ||    
T  24947742 aaagaccaaagaatgatatattaacaaacaaggttaccttggtgtactgaaagtgaaaactacgcaccaaaataacagaaacatacagaa--------ac 24947651  T
Q  393 tgtacaaacagcagaaacacaaacagacaatactaaataacagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtga 492  Q
     | | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24947650 agcagaaacagcagaaacacagacagacaatactaaataacagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtga 24947551  T
Q  493 catatttcgaccggaagtagttctatttaatgaaacgaaattcagcatatgtgaatgggatattaggatccatccttttctatttaacaagagattgtta 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24947550 catatttcgaccggaagtagttctatttaatgaaacgaaattcagcatatgtgaatgggatattaggatccatccttttctatttaacatgagattgtta 24947451  T
Q  593 ctaagcaaccgttaaaaaattgagagaaagcatgcaattcaaacttaataacaaagatgcaaatgttgtactatcttcctttcaaattatataccagcta 692  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24947450 ctaagcaaccgttaaaaaattgagagaaagcatgcaattcaaacttaataacaaagatgcaaatgttgtactatcttcctttcaaattatataccagcta 24947351  T
Q  693 cctttactaaatcattgataaatatgcaactggcacttgattcat 737  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  24947350 cctttactaaatcattgataaatatgcaactggcacttgattcat 24947306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 24948048 - 24947971
Alignment:
Q  20 ttccccgcacatatatagagaataatcatttgagtcgacgaagaaagtggt-aaaacaatattttttgagttttaacaat 98  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||    
T  24948048 ttccccgcacatttatagagaataatcatttgagtcgacgaagaaagtggtaaaaacaata--ttttgagttttaacaat 24947971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 586 - 649
Target Start/End: Complemental strand, 24954241 - 24954178
Alignment:
Q  586 attgttactaagcaaccgttaaaaaattgagagaaagcatgcaattcaaacttaataacaaaga 649  Q
    |||| |||||||||||| |||||||  | | |||||||||||||||||||||||||||||||||    
T  24954241 attgctactaagcaacccttaaaaatctaacagaaagcatgcaattcaaacttaataacaaaga 24954178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 24955336 - 24955279
Alignment:
Q  159 aattcacaagacttaaattcgaactcaatatcagagacatatgttccattttaatcaac 217  Q
    |||||||||||||||||||| |||||||||||| ||| | |||||| ||||||||||||    
T  24955336 aattcacaagacttaaattctaactcaatatca-agagacatgttcaattttaatcaac 24955279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 448 - 499
Target Start/End: Original strand, 12664505 - 12664556
Alignment:
Q  448 aaataggattaagcctccgaaattggtaatcataatcgaaagtgacatattt 499  Q
    |||| |||||||||| || ||||||||||||||||||||| || ||||||||    
T  12664505 aaatgggattaagccaccaaaattggtaatcataatcgaatgtaacatattt 12664556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 671 - 716
Target Start/End: Complemental strand, 24954115 - 24954070
Alignment:
Q  671 ctttcaaattatataccagctacctttactaaatcattgataaata 716  Q
    |||||||||| ||| |||||||||||| || |||||||||||||||    
T  24954115 ctttcaaattgtattccagctaccttttctgaatcattgataaata 24954070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 413 - 503
Target Start/End: Original strand, 29552563 - 29552653
Alignment:
Q  413 aaacagacaatactaaataacagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtgacatatttcgac 503  Q
    ||||| |||| ||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  29552563 aaacaaacaacactaaataacagtagaaaaatacaaaataggattaagcctccaaaattggtaatcataatcgaaagcaacatatttcgac 29552653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 432 - 503
Target Start/End: Complemental strand, 42738971 - 42738900
Alignment:
Q  432 acagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtgacatatttcgac 503  Q
    |||||||||| ||| |||||| ||||||| || | |||||||||||||||||||||||| | ||||||||||    
T  42738971 acagctgaaacacagaaaataagattaagtcttcaaaattggtaatcataatcgaaagtaatatatttcgac 42738900  T

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Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 432 - 496
Target Start/End: Complemental strand, 38398171 - 38398107
Alignment:
Q  432 acagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtgacata 496  Q
    |||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||||    
T  38398171 acagttgaaacacacataataggattaagcctccaaaattggtaatcataatcgaaagtaacata 38398107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 409 - 503
Target Start/End: Original strand, 44189661 - 44189754
Alignment:
Q  409 acacaaacagacaatactaaataacagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtgacatatttcgac 503  Q
    ||||| |||||||| |||| || ||||| ||||||||||||||| ||||||| |||  |||||||| |||| |||||||||| ||||||||||||    
T  44189661 acacacacagacaacactagatgacagcagaaaaacacaaaataagattaagtctctaaaattggt-atcacaatcgaaagtaacatatttcgac 44189754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 432 - 503
Target Start/End: Complemental strand, 17174131 - 17174060
Alignment:
Q  432 acagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtgacatatttcgac 503  Q
    |||| ||||| ||| ||||||||||||||||||| |||||| ||||||||||||||||| | ||||||||||    
T  17174131 acagttgaaacacataaaataggattaagcctccaaaattgataatcataatcgaaagtaatatatttcgac 17174060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 413 - 488
Target Start/End: Original strand, 37219616 - 37219691
Alignment:
Q  413 aaacagacaatactaaataacagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaa 488  Q
    ||||| |||| |||||||||||   || |||||||||||||||||||||||   ||||||||||||||||||||||    
T  37219616 aaacaaacaacactaaataacactagagaaacacaaaataggattaagcctaaaaaattggtaatcataatcgaaa 37219691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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