View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5814_high_106 (Length: 225)

Name: NF5814_high_106
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5814_high_106
NF5814_high_106
[»] chr6 (5 HSPs)
chr6 (17-205)||(34116108-34116296)
chr6 (115-205)||(34143094-34143187)
chr6 (115-205)||(34155710-34155803)
chr6 (32-97)||(2252018-2252083)
chr6 (32-99)||(31462374-31462439)
[»] chr8 (2 HSPs)
chr8 (32-105)||(27707860-27707933)
chr8 (32-105)||(25029714-25029787)
[»] chr5 (3 HSPs)
chr5 (38-105)||(8117504-8117571)
chr5 (32-88)||(37325861-37325917)
chr5 (32-76)||(30874531-30874575)
[»] chr4 (3 HSPs)
chr4 (35-105)||(51850378-51850448)
chr4 (33-88)||(3125298-3125353)
chr4 (62-105)||(52643529-52643572)
[»] scaffold0252 (1 HSPs)
scaffold0252 (29-105)||(16550-16626)
[»] chr1 (3 HSPs)
chr1 (32-100)||(19636175-19636243)
chr1 (32-99)||(32226045-32226112)
chr1 (35-105)||(25710741-25710811)
[»] chr2 (2 HSPs)
chr2 (32-98)||(12732709-12732775)
chr2 (32-105)||(45709720-45709793)
[»] scaffold0072 (1 HSPs)
scaffold0072 (32-105)||(5971-6044)
[»] scaffold0024 (1 HSPs)
scaffold0024 (35-79)||(101734-101778)
[»] chr7 (2 HSPs)
chr7 (32-105)||(24375643-24375716)
chr7 (33-105)||(19835450-19835522)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 34116108 - 34116296
Alignment:
Q  17 agcataggagtggtgaatcccggatagcggtgcgtagtggcagaccccaaaaatgggatagcgtataacggtatgacaaatagcagtcatagatatcact 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34116108 agcataggagtggtgaatcccggatagcggtgcgtagtggcagaccccaaaaatgggatagcgtataacggtatgacaaatagcagtcatagatatcact 34116207  T
Q  117 agcaccgtcatagactggacaagcctctaacgtcaacacatcggagcccatgcatgtaaagatcaaaatgtctttattaaggttgtaat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34116208 agcaccgtcatagactggacaagcctctaacgtcaacacatcggagcacatgcatgtaaagatcaaaatgtctttattaaggttgtaat 34116296  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 115 - 205
Target Start/End: Original strand, 34143094 - 34143187
Alignment:
Q  115 ctagcaccgtcatagactggacaagcctctaacgtcaacacatc---ggagcccatgcatgtaaagatcaaaatgtctttattaaggttgtaat 205  Q
    ||||||||||||||| ||||||||||||||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||    
T  34143094 ctagcaccgtcataggctggacaagcctctaacgtcaacacatcatcggagcacatgcatgtaaagatcaaaatgtctttattaaggttgtaat 34143187  T

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Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 115 - 205
Target Start/End: Original strand, 34155710 - 34155803
Alignment:
Q  115 ctagcaccgtcatagactggacaagcctctaacgtcaacacatc---ggagcccatgcatgtaaagatcaaaatgtctttattaaggttgtaat 205  Q
    ||||||||||||||| ||||||||||||||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||    
T  34155710 ctagcaccgtcataggctggacaagcctctaacgtcaacacatcatcggagcacatgcatgtaaagatcaaaatgtctttattaaggttgtaat 34155803  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 2252018 - 2252083
Alignment:
Q  32 aatcccggatagcggtgcgtagtggcagaccccaaaaatgggatagcgtataacggtatgacaaat 97  Q
    |||| ||||||||||||||||| ||| |||||||||| |||||||||||||| |||||| ||||||    
T  2252018 aatctcggatagcggtgcgtagcggctgaccccaaaagtgggatagcgtatagcggtattacaaat 2252083  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 31462374 - 31462439
Alignment:
Q  32 aatcccggatagcggtgcgtagtggcagaccccaaaaatgggatagcgtataacggtatgacaaatag 99  Q
    |||||| ||||||||||||||||||| |||||||||| |||||||| |||||   |||||||||||||    
T  31462374 aatcccagatagcggtgcgtagtggccgaccccaaaagtgggatagtgtata--cgtatgacaaatag 31462439  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 27707860 - 27707933
Alignment:
Q  32 aatcccggatagcggtgcgtagtggcagaccccaaaaatgggatagcgtataacggtatgacaaatagcagtca 105  Q
    |||||||||||||||||||||||||| |||||||||  |||||||||||||| |||||||||||||||| ||||    
T  27707860 aatcccggatagcggtgcgtagtggccgaccccaaatgtgggatagcgtatagcggtatgacaaatagcggtca 27707933  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 25029787 - 25029714
Alignment:
Q  32 aatcccggatagcggtgcgtagtggcagaccccaaaaatgggatagcgtataacggtatgacaaatagcagtca 105  Q
    |||||||||||||||||| ||| |||  |||||||||||||||||| ||||| | |||||||||||||| ||||    
T  25029787 aatcccggatagcggtgcctagcggctaaccccaaaaatgggatagtgtatagcagtatgacaaatagcggtca 25029714  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 8117571 - 8117504
Alignment:
Q  38 ggatagcggtgcgtagtggcagaccccaaaaatgggatagcgtataacggtatgacaaatagcagtca 105  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||| ||||    
T  8117571 ggatagcggtgcgtagtggccaaccccaaaaatgggatagcgtatagcggtatgacaaatagcggtca 8117504  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 37325917 - 37325861
Alignment:
Q  32 aatcccggatagcggtgcgtagtggcagaccccaaaaatgggatagcgtataacggt 88  Q
    |||||||||||||||||||||| ||| |||||||||| ||||||||| |||| ||||    
T  37325917 aatcccggatagcggtgcgtagcggccgaccccaaaagtgggatagcatatagcggt 37325861  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 30874531 - 30874575
Alignment:
Q  32 aatcccggatagcggtgcgtagtggcagaccccaaaaatgggata 76  Q
    |||||||||||| ||||||||||||| || |||||||||||||||    
T  30874531 aatcccggatagtggtgcgtagtggccgatcccaaaaatgggata 30874575  T

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Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 51850378 - 51850448
Alignment:
Q  35 cccggatagcggtgcgtagtggcagaccccaaaaatgggatagcgtataacggtatgacaaatagcagtca 105  Q
    ||||||||||||||||||| ||| |||||||||| ||||||||||||||  ||||||||||||||| ||||    
T  51850378 cccggatagcggtgcgtagcggccgaccccaaaagtgggatagcgtatagtggtatgacaaatagcggtca 51850448  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 3125353 - 3125298
Alignment:
Q  33 atcccggatagcggtgcgtagtggcagaccccaaaaatgggatagcgtataacggt 88  Q
    ||||||||||||||||||||| |||  ||||||||| ||| |||||||||| ||||    
T  3125353 atcccggatagcggtgcgtagcggccaaccccaaaagtggaatagcgtatagcggt 3125298  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 52643572 - 52643529
Alignment:
Q  62 cccaaaaatgggatagcgtataacggtatgacaaatagcagtca 105  Q
    ||||||| |||||||||||||||||||||| |||| ||||||||    
T  52643572 cccaaaagtgggatagcgtataacggtatgccaaaaagcagtca 52643529  T

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Target: scaffold0252 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 16550 - 16626
Alignment:
Q  29 gtgaatcccggatagcggtgcgtagtggcagaccccaaaaatgggatagcgtataacggtatgacaaatagcagtca 105  Q
    ||||||||||||| |||| || ||||||| |||||||||| ||||||||||||||  ||||||||||||||| ||||    
T  16550 gtgaatcccggatggcggagcatagtggccgaccccaaaagtgggatagcgtatagaggtatgacaaatagcggtca 16626  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 19636243 - 19636175
Alignment:
Q  32 aatcccggatagcggtgcgtagtggcagaccccaaaaatgggatagcgtataacggtatgacaaatagc 100  Q
    ||||||||||||||||||||||  || ||||||||| || |||||||||||| | ||||||||||||||    
T  19636243 aatcccggatagcggtgcgtagcagccgaccccaaacataggatagcgtatagcagtatgacaaatagc 19636175  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 32226045 - 32226112
Alignment:
Q  32 aatcccggatagcggtgcgtagtggcagaccccaaaaatgggatagcgtataacggtatgacaaatag 99  Q
    |||| |||||||||||| |||| ||| |||||||||| |||||||||||||| |||| ||||||||||    
T  32226045 aatctcggatagcggtgtgtagcggccgaccccaaaagtgggatagcgtatagcggtttgacaaatag 32226112  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 25710741 - 25710811
Alignment:
Q  35 cccggatagcggtgcgtagtggcagaccccaaaaatgggatagcgtataacggtatgacaaatagcagtca 105  Q
    ||||||||||||| ||||| ||| |||||||||  ||| |||||||||| | |||| ||||||||| ||||    
T  25710741 cccggatagcggttcgtagcggccgaccccaaaggtggaatagcgtataccagtataacaaatagcggtca 25710811  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 12732709 - 12732775
Alignment:
Q  32 aatcccggatagcggtgcgtagtggcagaccccaaaaatgggatagcgtataacggtatgacaaata 98  Q
    ||||||||||||||||| ||||  ||  ||||||||| |||||||||||||| ||||||||||||||    
T  12732709 aatcccggatagcggtgtgtagcagccaaccccaaaagtgggatagcgtatagcggtatgacaaata 12732775  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 45709720 - 45709793
Alignment:
Q  32 aatcccggatagcggtgcgtagtggcagaccccaaaaatgggatagcgtataacggtatgacaaatagcagtca 105  Q
    |||| ||||| || |||| ||| ||| ||||||||||||||||||| |||||||||||| ||||| ||| ||||    
T  45709720 aatctcggatggcagtgcatagcggccgaccccaaaaatgggatagtgtataacggtataacaaagagcggtca 45709793  T

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Target: scaffold0072 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 5971 - 6044
Alignment:
Q  32 aatcccggatagcggtgcgtagtggcagaccccaaaaatgggatagcgtataacggtatgacaaatagcagtca 105  Q
    ||||||||||||| | |||||| ||| || ||||||| | |||||||||||| |||||||||||||||| ||||    
T  5971 aatcccggatagcagagcgtagcggccgatcccaaaagttggatagcgtatagcggtatgacaaatagcggtca 6044  T

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Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 101778 - 101734
Alignment:
Q  35 cccggatagcggtgcgtagtggcagaccccaaaaatgggatagcg 79  Q
    |||||||||||||| |||| |||||||||||||||||||||||||    
T  101778 cccggatagcggtgtgtagcggcagaccccaaaaatgggatagcg 101734  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 24375716 - 24375643
Alignment:
Q  32 aatcccggatagcggtgcgtagtggcagaccccaaaaatgggatagcgtataacggtatgacaaatagcagtca 105  Q
    ||||||||||||| |  ||||| |||  ||||||||| |||||||||||||| |||||| ||||||||| ||||    
T  24375716 aatcccggatagcagcacgtagcggccaaccccaaaagtgggatagcgtatagcggtataacaaatagcggtca 24375643  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 19835522 - 19835450
Alignment:
Q  33 atcccggatagcggtgcgtagtggcagaccccaaaaatgggatagcgtataacggtatgacaaatagcagtca 105  Q
    ||||| ||||| ||||||||| ||| ||||||||||   |||||||||||| | |||||||||||||| ||||    
T  19835522 atcccagatagtggtgcgtagcggccgaccccaaaagcaggatagcgtatagctgtatgacaaatagcggtca 19835450  T

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