View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5814_high_109 (Length: 220)

Name: NF5814_high_109
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5814_high_109
NF5814_high_109
[»] chr2 (1 HSPs)
chr2 (18-200)||(28646082-28646265)
[»] chr7 (1 HSPs)
chr7 (23-186)||(37605566-37605730)
[»] chr8 (7 HSPs)
chr8 (106-200)||(16843269-16843363)
chr8 (129-196)||(27289831-27289898)
chr8 (86-200)||(9825269-9825383)
chr8 (84-120)||(21512231-21512267)
chr8 (140-191)||(39902994-39903045)
chr8 (108-164)||(9066890-9066946)
chr8 (84-152)||(30342798-30342866)
[»] chr3 (1 HSPs)
chr3 (84-184)||(32135094-32135194)
[»] chr6 (2 HSPs)
chr6 (84-162)||(32317770-32317848)
chr6 (138-186)||(31169162-31169210)
[»] chr4 (2 HSPs)
chr4 (84-199)||(52878993-52879107)
chr4 (84-186)||(9021577-9021679)


Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 28646082 - 28646265
Alignment:
Q  18 aaaacaagggttttaagcccctaaaatttttagatctcgtattagacctt-cagtcttttttgctttaatatattttcgtaagtcaaactctttaaacat 116  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28646082 aaaacaagggttttaggcccctaaattttttagatctcgtattagaccatacagtctttttcgctttaatatattttcgtaagtcaaactctttaaacat 28646181  T
Q  117 ttttgtgtcttgctcggttagtagttaaatggagagttgtagacttttgatttatattgcaagtttgatcttaaaagtagctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  28646182 ttttgtgtcttgctcggttagtagttaaatggagagttgtagacttttgatttatgttgcatgtttgatcttaaaagtagctat 28646265  T

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Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 37605566 - 37605730
Alignment:
Q  23 aagggttttaagcccctaaaatttttagatctcgtattagaccttcagtcttttttgctt-taatatattttcgtaagtcaaactctttaaacatttttg 121  Q
    ||||||||||| || |||||||||||||||||| ||||| | | | | | ||||| ||||  |||||||||| || | ||||| |||||||| ||||| |    
T  37605566 aagggttttaaacctctaaaatttttagatctcatattaaatcctgaatatttttcgcttgaaatatatttttgtcattcaaattctttaaatattttcg 37605665  T
Q  122 tgtcttgctcggttagtagttaaatggagagttgtagacttttgatttatattgcaagtttgatc 186  Q
     ||||  |||||||| |||||| || |||||||||||| |||| ||| || ||||||||||||||    
T  37605666 cgtctaactcggttattagttatatagagagttgtagaattttaattcatcttgcaagtttgatc 37605730  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 16843269 - 16843363
Alignment:
Q  106 tctttaaacatttttgtgtcttgctcggttagtagttaaatggagagttgtagacttttgatttatattgcaagtttgatcttaaaagtagctat 200  Q
    ||||||||||| |||| |||| ||||  ||| ||||||||| |||| ||||||||||||  || |||||||||||||||||| ||||||||||||    
T  16843269 tctttaaacatgtttgcgtctagctcaattaatagttaaatagagaattgtagacttttagttcatattgcaagtttgatctcaaaagtagctat 16843363  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 27289831 - 27289898
Alignment:
Q  129 ctcggttagtagttaaatggagagttgtagacttttgatttatattgcaagtttgatcttaaaagtag 196  Q
    ||||||||||||||||||| |||||| |||||||||  || || ||||||||||||||| ||| ||||    
T  27289831 ctcggttagtagttaaatgaagagttatagacttttagttcatgttgcaagtttgatctcaaaggtag 27289898  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 9825383 - 9825269
Alignment:
Q  86 tatattttcgtaagtcaaactctttaaacatttttgtgtcttgctcggttagtagttaaatggagagttgtagacttttgatttatattgcaagtttgat 185  Q
    ||||||||||||||||||| ||||||||||||||    | |  |||| || ||||||||||| |||||| |||| || |  ||||| |||||||||||||    
T  9825383 tatattttcgtaagtcaaattctttaaacattttgcgctttaactcgattggtagttaaatgaagagttatagagttgttgtttatgttgcaagtttgat 9825284  T
Q  186 cttaaaagtagctat 200  Q
    | ||||  |||||||    
T  9825283 cataaatatagctat 9825269  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 21512267 - 21512231
Alignment:
Q  84 aatatattttcgtaagtcaaactctttaaacattttt 120  Q
    ||||||||||||||||||||| |||||||||||||||    
T  21512267 aatatattttcgtaagtcaaattctttaaacattttt 21512231  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 39903045 - 39902994
Alignment:
Q  140 gttaaatggagagttgtagacttttgatttatattgcaagtttgatcttaaa 191  Q
    |||||||||||||||||||| || |  ||||| |||||||||||||||||||    
T  39903045 gttaaatggagagttgtagatttgtagtttatgttgcaagtttgatcttaaa 39902994  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 9066890 - 9066946
Alignment:
Q  108 tttaaacatttttgtgtcttgctcggttagtagttaaatggagagttgtagactttt 164  Q
    |||||||||||||||| ||  |||||| ||| ||| | |||||||||||||||||||    
T  9066890 tttaaacatttttgtgcctaactcggtcagtggtttagtggagagttgtagactttt 9066946  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 30342798 - 30342866
Alignment:
Q  84 aatatattttcgtaagtcaaactctttaaacatttttgtgtcttgctcggttagtagttaaatggagag 152  Q
    ||||||||||| |||||| || | |||||||||||||| |||   |||  |||||||||||||||||||    
T  30342798 aatatattttcataagtcgaattttttaaacatttttgcgtcgaactcaattagtagttaaatggagag 30342866  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 32135094 - 32135194
Alignment:
Q  84 aatatattttcgtaagtcaaactctttaaacatttttgtgtcttgctcggttagtagttaaatggagagttgtagacttttgatttatattgcaagtttg 183  Q
    ||||||||| |||| |||||| |||||||| | |||||  ||| |||| |||  ||||||||||||||||||||||||| |  ||||| |||||||||||    
T  32135094 aatatatttccgtatgtcaaattctttaaaaacttttgcttctagctcagttgatagttaaatggagagttgtagacttgtagtttatgttgcaagtttg 32135193  T
Q  184 a 184  Q
    |    
T  32135194 a 32135194  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 32317770 - 32317848
Alignment:
Q  84 aatatattttcgtaagtcaaactctttaaacatttttgtgtcttgctcggttagtagttaaatggagagttgtagactt 162  Q
    |||||||||| | |||||||  | |||||||||||||  || | |||||||||||||||||||| ||||||||| ||||    
T  32317770 aatatatttttgcaagtcaatttttttaaacatttttccgtttagctcggttagtagttaaatgaagagttgtaaactt 32317848  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 31169162 - 31169210
Alignment:
Q  138 tagttaaatggagagttgtagacttttgatttatattgcaagtttgatc 186  Q
    |||||||||||||||||||||| ||||  || || ||||||||||||||    
T  31169162 tagttaaatggagagttgtagatttttagttcatgttgcaagtttgatc 31169210  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 199
Target Start/End: Complemental strand, 52879107 - 52878993
Alignment:
Q  84 aatatattttcgtaagtcaaactctttaaacattttt-gtgtcttgctcggttagtagttaaatggagagttgtagacttttgatttatattgcaagttt 182  Q
    |||||||||| |||||||||| |||||||| |||||| | | || | ||| ||| |||||||||||||||  | ||||||||  || || ||||||||||    
T  52879107 aatatatttttgtaagtcaaattctttaaatattttttgcgcctagatcgattactagttaaatggagag--gcagacttttagttcatgttgcaagttt 52879010  T
Q  183 gatcttaaaagtagcta 199  Q
    ||| ||||| |||||||    
T  52879009 gatgttaaaggtagcta 52878993  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 186
Target Start/End: Original strand, 9021577 - 9021679
Alignment:
Q  84 aatatattttcgtaagtcaaactctttaaacatttttgtgtcttgctcggttagtagttaaatggagagttgtagacttttgatttatattgcaagtttg 183  Q
    |||||| ||| |||||||||| |||||||||| |||| ||||| ||||| ||  |  |||||| |||||||||||| || |  || || |||||||||||    
T  9021577 aatataattttgtaagtcaaattctttaaacagttttatgtctggctcgattgttcattaaatagagagttgtagatttatagttcatgttgcaagtttg 9021676  T
Q  184 atc 186  Q
    |||    
T  9021677 atc 9021679  T

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