View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5814_high_11 (Length: 515)

Name: NF5814_high_11
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5814_high_11
NF5814_high_11
[»] chr6 (2 HSPs)
chr6 (15-515)||(21005470-21005970)
chr6 (391-445)||(21005990-21006044)
[»] scaffold0014 (1 HSPs)
scaffold0014 (15-80)||(66796-66861)
[»] scaffold0557 (5 HSPs)
scaffold0557 (386-448)||(5969-6031)
scaffold0557 (386-445)||(5885-5944)
scaffold0557 (312-352)||(5969-6009)
scaffold0557 (386-448)||(5021-5083)
scaffold0557 (385-445)||(5107-5167)
[»] scaffold0442 (4 HSPs)
scaffold0442 (386-448)||(9363-9425)
scaffold0442 (386-445)||(9279-9338)
scaffold0442 (386-448)||(8386-8448)
scaffold0442 (312-352)||(9363-9403)
[»] scaffold0115 (3 HSPs)
scaffold0115 (312-352)||(46896-46936)
scaffold0115 (386-445)||(46961-47020)
scaffold0115 (408-448)||(46896-46936)
[»] chr1 (1 HSPs)
chr1 (386-489)||(41336427-41336527)


Alignment Details
Target: chr6 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 15 - 515
Target Start/End: Original strand, 21005470 - 21005970
Alignment:
Q  15 cacagataacacaacaaataatacatcgtacttaacgtgaattctttcaatgaagttatccccatgcgttgtatagttagaaacactaatagtgagatta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21005470 cacagataacacaacaaataatacatcgtacttaacgtgaattctttcaatgaagttatccccatgcgttgtatagttagaaacactaatagtgagatta 21005569  T
Q  115 caaaaccttcaaatctaaaactctcataacccctggccactaagaaaagggacattagaaatactcccacatcgacggaaaggtctattcaatacatgtt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21005570 caaaaccttcaaatctaaaactctcataacccctggccactaagaaaagggacattagaaatactcccacatcgacggaaaggtctattcaatacatgtt 21005669  T
Q  215 gatcaaatggttgtgtgaataaaaacacaaacatgaatgttatttcacctgccaacattattccaactcctcttgttgttatccaaaactttaagcctca 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21005670 gatcaaatggttgtgtgaataaaaacacaaacatgaatgttatttcacctgccaacattattccaactcctcttgttgttatccaaaactttaagcctca 21005769  T
Q  315 aatctatcctgcaagtgttcaacaggagaagaacaacaccgtcatgattgctatggtttcaactcctagtagtgtgaatcaaaacatgcagcctcaaatc 414  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21005770 aatctaccctgcaagtgttcaacaggagaagaataacaccgtcatgattgctatggtttcaactcctagtagtgtgaatcaaaacatgcagcctcaaatc 21005869  T
Q  415 taccatgcaagtgttcaacaaaacaagaacaacaccctcaagagtacgatgattccacatcctggtgttgatcaaccagagaagaacaacacgagtacta 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21005870 taccatgcaagtgttcaacaaaacaagaacaacaccctcaagagtacgatgattccacatcctggtgttgatcaaccagagaagaacaacatgagtacta 21005969  T
Q  515 t 515  Q
    |    
T  21005970 t 21005970  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 21005990 - 21006044
Alignment:
Q  391 aatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca 445  Q
    |||||||||||||||| ||||||||| | || |||||||||||||||||||||||    
T  21005990 aatcaaaacatgcagcgtcaaatctatcctgaaagtgttcaacaaaacaagaaca 21006044  T

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Target: scaffold0014 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 66796 - 66861
Alignment:
Q  15 cacagataacacaacaaataatacatcgtacttaacgtgaattctttcaatgaagttatccccatg 80  Q
    ||||||||||||||||||| ||| |||||| |||| |||||||||| | |||||||||||||||||    
T  66796 cacagataacacaacaaattataaatcgtatttaatgtgaattcttccgatgaagttatccccatg 66861  T

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Target: scaffold0557 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 386 - 448
Target Start/End: Complemental strand, 6031 - 5969
Alignment:
Q  386 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaaca 448  Q
    |||| |||||||||||||| | |||||||||||||||||||||||||||  | ||||||||||    
T  6031 gtgttaatcaaaacatgcaccatcaaatctaccatgcaagtgttcaacaggagaagaacaaca 5969  T

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Target: scaffold0557; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 445
Target Start/End: Complemental strand, 5944 - 5885
Alignment:
Q  386 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca 445  Q
    |||| ||||||| |||||| | ||||||||||| || |||||||||||||||||||||||    
T  5944 gtgttaatcaaagcatgcaacgtcaaatctaccctggaagtgttcaacaaaacaagaaca 5885  T

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Target: scaffold0557; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 6009 - 5969
Alignment:
Q  312 tcaaatctatcctgcaagtgttcaacaggagaagaacaaca 352  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  6009 tcaaatctaccatgcaagtgttcaacaggagaagaacaaca 5969  T

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Target: scaffold0557; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 448
Target Start/End: Original strand, 5021 - 5083
Alignment:
Q  386 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaaca 448  Q
    |||| |||||||||||||| | |||||||||| ||| ||||||||||||  | ||||||||||    
T  5021 gtgttaatcaaaacatgcaccatcaaatctacaatgaaagtgttcaacatgagaagaacaaca 5083  T

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Target: scaffold0557; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 445
Target Start/End: Original strand, 5107 - 5167
Alignment:
Q  385 agtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca 445  Q
    ||||| ||| ||| |||| ||| ||||||||||| |  |||||||||||||||||||||||    
T  5107 agtgttaattaaagcatgtagcgtcaaatctaccctagaagtgttcaacaaaacaagaaca 5167  T

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Target: scaffold0442 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 386 - 448
Target Start/End: Complemental strand, 9425 - 9363
Alignment:
Q  386 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaaca 448  Q
    |||| |||||||||||||| | |||||||||||||||||||||||||||  | ||||||||||    
T  9425 gtgttaatcaaaacatgcaccatcaaatctaccatgcaagtgttcaacagtagaagaacaaca 9363  T

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Target: scaffold0442; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 445
Target Start/End: Complemental strand, 9338 - 9279
Alignment:
Q  386 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca 445  Q
    |||| ||||||| |||||| | ||||||||||| || |||||||||||||||||||||||    
T  9338 gtgttaatcaaagcatgcaacttcaaatctaccctggaagtgttcaacaaaacaagaaca 9279  T

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Target: scaffold0442; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 448
Target Start/End: Original strand, 8386 - 8448
Alignment:
Q  386 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaaca 448  Q
    |||| |||||||||||||| | |||||||||||||  ||||||||||||  | ||||||||||    
T  8386 gtgttaatcaaaacatgcaccatcaaatctaccataaaagtgttcaacatgagaagaacaaca 8448  T

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Target: scaffold0442; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 9403 - 9363
Alignment:
Q  312 tcaaatctatcctgcaagtgttcaacaggagaagaacaaca 352  Q
    ||||||||| | |||||||||||||||| ||||||||||||    
T  9403 tcaaatctaccatgcaagtgttcaacagtagaagaacaaca 9363  T

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Target: scaffold0115 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 46896 - 46936
Alignment:
Q  312 tcaaatctatcctgcaagtgttcaacaggagaagaacaaca 352  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  46896 tcaaatctaccatgcaagtgttcaacaggagaagaacaaca 46936  T

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Target: scaffold0115; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 445
Target Start/End: Original strand, 46961 - 47020
Alignment:
Q  386 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca 445  Q
    |||| ||||||| |||||| | ||||||||||| || ||||||||||||| |||||||||    
T  46961 gtgttaatcaaagcatgcaacgtcaaatctaccctggaagtgttcaacaatacaagaaca 47020  T

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Target: scaffold0115; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 448
Target Start/End: Original strand, 46896 - 46936
Alignment:
Q  408 tcaaatctaccatgcaagtgttcaacaaaacaagaacaaca 448  Q
    |||||||||||||||||||||||||||  | ||||||||||    
T  46896 tcaaatctaccatgcaagtgttcaacaggagaagaacaaca 46936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 489
Target Start/End: Original strand, 41336427 - 41336527
Alignment:
Q  386 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaacaccctcaagagtacgatgattccacatcctggtgttga 485  Q
    |||| ||||||| |||||| | ||||||||||  || |||||||||||| ||||||   |||||| ||| |||||| ||| |||||  |||||||||| |    
T  41336427 gtgtcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaag---aacaccatcatgagtactatggttccaactcctggtgttaa 41336523  T
Q  486 tcaa 489  Q
    ||||    
T  41336524 tcaa 41336527  T

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