View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_high_114 (Length: 202)
Name: NF5814_high_114
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_114 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 10707498 - 10707332
Alignment:
| Q |
20 |
tggcaatcttgcttcagaggggtccattcctagcacgacctctgtagataaggtttgttctgaacttattttcatgcatgtgacttttatcactctgtac |
119 |
Q |
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| T |
10707498 |
tggcaatcttgcttcagaggggtccattcctagcacgacctctgtagataaggtttgttctgaacttattttcatgcatgtgacttttatcactctgtac |
10707399 |
T |
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| Q |
120 |
tgcattttacctgcattgaagttttagctgcaaatttattttacctctcagtattacaagttaatta |
186 |
Q |
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| T |
10707398 |
tgcattttacctgcattgaagttttagctgcaaatttattttacctctcagtattacaagttaatta |
10707332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 26651439 - 26651607
Alignment:
| Q |
20 |
tggcaatcttgcttcagaggggtccattcctagcacgacctctgtagataaggtttgttctgaacttattttcatgcat--gtgacttttatcactctgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
26651439 |
tggcaatcttgcttcagaggggtccattcctagcacgacctctgtagataaggtttgttctgaacttaatttcatgcatcagtgacttttatcactctgt |
26651538 |
T |
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| Q |
118 |
actgcattttacctgcattgaagttttagctgcaaatttattttacctctcagtattacaagttaatta |
186 |
Q |
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| T |
26651539 |
actgcattttacctgcattgaagttttagcttcaaatttattttacttctcagtattacaagttaatta |
26651607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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