View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_high_12 (Length: 515)
Name: NF5814_high_12
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 17893352 - 17893856
Alignment:
| Q |
1 |
aaacttgctctgtttattcaccccaaaataagcaatgttctattgttattattagtactactactcttgtcnnnnnnntaaaataattattagtactact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
17893352 |
aaacttgctctgtttattcaccccaaaataagcaatgttctattgttattattagtactactactcttgtcaaaaa--taaaataattgttagtactaca |
17893449 |
T |
|
| Q |
101 |
attattattagtattatttggtgtacaatgtt--------------ccgttaattttataatttacttataaatttaatttaaaaaatatatatccttct |
186 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17893450 |
attattattagtattatttggtgtacaatgtttaaaaaacaatgttccgttaattttataatttacttataaatttaatttaaaaaatatacatccttct |
17893549 |
T |
|
| Q |
187 |
agaacattaacaaaaacttgtacnnnnnnnntaagaacattaaacaaaacctaccatatgatttcatatggaaattattagaattacaaatttagtttga |
286 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17893550 |
agaacatcaacaaaaacttgtacaaaaaaa-taagaacattaaccaaaacctaccatatgatttcagatggaaattattagaattacaaatttagtttga |
17893648 |
T |
|
| Q |
287 |
atgattatgcgtaaagtttttcttacactatactttcttttgaaaggttcttacactgtacttcataatccaacgttatacttatagtatatgatttcaa |
386 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17893649 |
atgattatgcgtaaagtgtttcttacactatactttcttttgaaaggttcttacactgtacttcataatccaacgttatacttatagtatatgatttcaa |
17893748 |
T |
|
| Q |
387 |
tgtaacttaaactcaataaatttgtaagattatcccttnnnnnnntatgtacgattattaaaatacctctaaaaaatttgtcacgcatgagtcttgatct |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17893749 |
tgtaacttaaactcaataaatttgtaagattatcccttaaaaaaatatgtaagattattaaaatacctctaaaaaatttgtcacgcatgagtcttgatct |
17893848 |
T |
|
| Q |
487 |
gaagcacg |
494 |
Q |
| |
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|||||||| |
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| T |
17893849 |
gaagcacg |
17893856 |
T |
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