View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_high_16 (Length: 480)
Name: NF5814_high_16
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 5e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 76 - 323
Target Start/End: Original strand, 13717436 - 13717694
Alignment:
| Q |
76 |
aatgaagaggattcgaactcgagatagaatgatttgatgtgttacccctaatttaagtgatattaagacgtaaagcacattatagctgatgacctaatta |
175 |
Q |
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| T |
13717436 |
aatggagaggattcgaactcgagatagattgatctgatgtgttacccctaatttaagtgatattaagacgtaaagcacattatagctgatgacctaatta |
13717535 |
T |
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| Q |
176 |
cacacaaatacgtcaa---------ctcacctttacgtaggagagtttgagccacatgatgaggcacacatgtaccttttcatttatc-tat--tacact |
263 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| || ||| || ||| |
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| T |
13717536 |
cacacaaatacgtcaaccaggcagtctcacctttacgtaggagagtttgagccacataatgaggcacacatataccttttcatttgtcttattatatact |
13717635 |
T |
|
| Q |
264 |
ttatatatagtactcgtattaacctacgatttcgatttttaaggaaacagatatatacta |
323 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13717636 |
ttatatatagta-tgctattaacctacgatttcgatttttaaggaaacagatatatacta |
13717694 |
T |
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