View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_high_17 (Length: 480)
Name: NF5814_high_17
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 13 - 461
Target Start/End: Original strand, 53492109 - 53492557
Alignment:
| Q |
13 |
aatatccaagactaattcaccaaacccaaacaaggtgaacacccattcaaaaagaaaactcaccgtaagatgaaaatccattcaaaaagaaaatgggcag |
112 |
Q |
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| T |
53492109 |
aatatccaagactaattcaccaaacccaaacaaggtgaacacccattcaaaaagaaaactcaccgtaagatgaaaatccattcaaaaagaaaatgggcag |
53492208 |
T |
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| Q |
113 |
aattttaaggcattatgtaagacatataactacaatgcataatatcaatttttggaattgtttaagcctcttatataaagcttgaaagttttcattacgt |
212 |
Q |
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| T |
53492209 |
aattttaaggcattatgtaagacatataactacaatgcataatatcaatttttggaattgtttaagcctcttatataaagcttgaaagttttcattacgt |
53492308 |
T |
|
| Q |
213 |
tacagcagccaacacattgttataacatggaaaaaggaaaacatggtaaaaaagaaagtacctgatgaatggtgtgggatctccgaccacccatctaaca |
312 |
Q |
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| T |
53492309 |
tacagcagccaacacattgttataacatggaaaaaggaaaagatggtaaaaaagaaagtacctgatgaatggtgtgggatctccgaccacccatctaaca |
53492408 |
T |
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| Q |
313 |
gcattgcaccattgattaagtttcaaaggcaagtcacgatgtccccttatccacttagagtaatagggatacatgatagtttcactacttggacgaagag |
412 |
Q |
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| T |
53492409 |
acattgcaccattgattgagtttcaaaggcaagtcacgatgtccccttatccacttagagtaatagggatacatgatagtttcactacttggacgaagag |
53492508 |
T |
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| Q |
413 |
caagatgagcttccaaatcagaatgtccagactttgttacccaagcaac |
461 |
Q |
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| T |
53492509 |
caagatgagcttccaaatcagaatgtccagactttgttacccaagcaac |
53492557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 88 - 461
Target Start/End: Original strand, 53500118 - 53500477
Alignment:
| Q |
88 |
atccattcaaaaagaaaatgggcagaattttaaggcattatgtaagacatataactacaatgcataatatcaatttttggaattgtttaagcctcttata |
187 |
Q |
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| T |
53500118 |
atccattcaaaaagaaaatgtgcagaactttaaggcattatgtaagacataaaactacaacgcataatatcaatttttagaattttttaa---------- |
53500207 |
T |
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| Q |
188 |
taaagcttgaaagttttcattacgttacagcagccaacacattgttataacatggaaaaaggaaaacatggtaaaaaagaaagtacctgatgaatggtgt |
287 |
Q |
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| T |
53500208 |
---agcttgaaagttttg-ttacgttacatcaaccaacacatcattataacatggaaaaaggaaaagatggtaaaaaaaaaagtacctgatgaacggtgt |
53500303 |
T |
|
| Q |
288 |
gggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggcaagtcacgatgtccccttatccacttagagtaatagggatacatg |
387 |
Q |
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| T |
53500304 |
gggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggcaagtcacgatgtccccttatccacttagagtaatagggatacatg |
53500403 |
T |
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| Q |
388 |
atagtttcactacttggacgaagagcaagatgagcttccaaatcagaatgtccagactttgttacccaagcaac |
461 |
Q |
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| T |
53500404 |
atagtttcactacttggacgaagagcaagatgagcttccaaatcagactgtccagactttgttacccaagcaac |
53500477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 245 - 461
Target Start/End: Original strand, 16071454 - 16071672
Alignment:
| Q |
245 |
aaaggaaaacatggtaaaaaagaaa--gtacctgatgaatggtgtgggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggc |
342 |
Q |
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| T |
16071454 |
aaaggaaaacatggtaaaaaaaaaaaagtgcctgattaatggtatgggatctccaaccacccatctaaccgcattgcaccattgattaagtttcaaaggc |
16071553 |
T |
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| Q |
343 |
aagtcacgatgtccccttatccacttagagtaatagggatacatgatagtttcactacttggacgaagagcaagatgagcttccaaatcagaatgtccag |
442 |
Q |
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| T |
16071554 |
aagtcgcggtgtccccttatccacttagagtaatagggatatattatagcttcactacttagacgaacagcaagatgagtttccaaatcagactgtccag |
16071653 |
T |
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| Q |
443 |
actttgttacccaagcaac |
461 |
Q |
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| T |
16071654 |
actttgttacccaagcaac |
16071672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 273 - 461
Target Start/End: Complemental strand, 45353706 - 45353518
Alignment:
| Q |
273 |
cctgatgaatggtgtgggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggcaagtcacgatgtccccttatccacttagag |
372 |
Q |
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|||||||||||||||||||| | || | ||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45353706 |
cctgatgaatggtgtgggattgctgaactcccatctaacaacattgcaccactgattaagcttcaaaggcaagtcacgatgtccccttatccacttagag |
45353607 |
T |
|
| Q |
373 |
taatagggatacatgatagtttcactacttggacgaagagcaagatgagcttccaaatcagaatgtccagactttgttacccaagcaac |
461 |
Q |
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|| || |||||||| | |||||||||| ||||||||| ||||| | || || |||||||| | |||||| || || ||||||||||| |
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| T |
45353606 |
tagtaaggatacataacagtttcactagttggacgaatagcaataggaatctctaaatcagattctccagatttggtcacccaagcaac |
45353518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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