View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5814_high_18 (Length: 478)

Name: NF5814_high_18
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5814_high_18
NF5814_high_18
[»] chr5 (4 HSPs)
chr5 (18-445)||(39674758-39675185)
chr5 (266-326)||(15210794-15210854)
chr5 (243-327)||(18175207-18175291)
chr5 (295-327)||(31802255-31802287)
[»] chr1 (4 HSPs)
chr1 (42-105)||(51044747-51044810)
chr1 (268-321)||(4865830-4865883)
chr1 (282-316)||(40800284-40800318)
chr1 (282-327)||(48607771-48607816)
[»] chr3 (1 HSPs)
chr3 (56-105)||(34626384-34626433)
[»] chr2 (2 HSPs)
chr2 (247-326)||(5164813-5164892)
chr2 (235-327)||(23405199-23405291)
[»] chr8 (2 HSPs)
chr8 (269-328)||(32648313-32648372)
chr8 (287-328)||(4230554-4230595)
[»] chr6 (3 HSPs)
chr6 (238-300)||(3037595-3037658)
chr6 (269-327)||(33697122-33697180)
chr6 (288-328)||(28957108-28957148)
[»] chr4 (3 HSPs)
chr4 (284-322)||(32866976-32867014)
chr4 (285-330)||(49233814-49233859)
chr4 (282-327)||(50376671-50376716)
[»] chr7 (4 HSPs)
chr7 (240-328)||(1798143-1798229)
chr7 (287-327)||(3948054-3948094)
chr7 (276-328)||(18677026-18677078)
chr7 (285-329)||(35644436-35644480)


Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 39674758 - 39675185
Alignment:
Q  18 ttggtgatctttcctttcttctttagaagagattcatcattgaggaagggtttatgtgtagctggatcaatcccttgtttcattagttacttggttgcag 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39674758 ttggtgatctttcctttcttctttagaagagattcattattgaggaagggtttatgtgtagctggatcaatcccttgtttcattacttacttggttgcag 39674857  T
Q  118 ccgatccctccaactcagtaattgtatcatccgaatctagtttagtaataaaattgaattaccatgcatgctattaaatttatttcagttacccnnnnnn 217  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  39674858 ccgatccctccaactaagtaattgtatcatccgaatctagtttagtaataaaattgaattaccatgcatgctattaaatttatttcagttaccctttttt 39674957  T
Q  218 ncctttcaaataacttaacctttttaagatgaataagtgagttatcttgagttcgaactccgatccctacatatataatgcaacgtctctatcaactgag 317  Q
     |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||  |  | | |||||||||||||||||||||| | ||| ||||    
T  39674958 tcctttcaaataacttaacatttttaagatgaataagtgagttatctggagttcgaacctcagttcttacatatataatgcaacgtctcaaccaattgag 39675057  T
Q  318 ttaaactcacaattttagtgtgtgagcttatttaaaaatggatacaatgtgttgtacaatttcgaatgaaaaactcacgctaatagactgtgtagttaaa 417  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39675058 ttaaactcacaattttagtgtgtgaacttatttaaaaatagatacaatgtgttgtacaatttcgaatgaaaaactcacgctaatagaccgtgtagttaaa 39675157  T
Q  418 tatttcaataaatcaatggacgtcagct 445  Q
    ||||| ||||||||||||||||||||||    
T  39675158 tattttaataaatcaatggacgtcagct 39675185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 15210854 - 15210794
Alignment:
Q  266 gagttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactca 326  Q
    |||||| ||| ||||||||| |||| |  |||||||||  |||||||||||||||||||||    
T  15210854 gagttcaaaccccgatccctgcatagaatatgcaacgttcctatcaactgagttaaactca 15210794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 327
Target Start/End: Complemental strand, 18175291 - 18175207
Alignment:
Q  243 aagatgaataagtgagttatcttgagttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactcac 327  Q
    |||||||||||||| | | ||| | |||||||| |||| |||||||||||  |||||||||| ||  |||| ||||||| |||||    
T  18175291 aagatgaataagtgggatgtctggggttcgaaccccgacccctacatataatatgcaacgtccctgacaaccgagttaagctcac 18175207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 31802255 - 31802287
Alignment:
Q  295 atgcaacgtctctatcaactgagttaaactcac 327  Q
    ||||| |||||||||||||||||||||||||||    
T  31802255 atgcatcgtctctatcaactgagttaaactcac 31802287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 51044810 - 51044747
Alignment:
Q  42 agaagagattcatcattgaggaagggtttatgtgtagctggatcaatcccttgtttcattagtt 105  Q
    ||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||    
T  51044810 agaagagattcattattgatcaagggtttatgtgtagctggatcaatcccttgtttcattagtt 51044747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 4865830 - 4865883
Alignment:
Q  268 gttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaa 321  Q
    ||||||||||||| |||||||||||| |||||| ||| ||| ||||||||||||    
T  4865830 gttcgaactccgacccctacatatattatgcaatgtccctaccaactgagttaa 4865883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 40800284 - 40800318
Alignment:
Q  282 ccctacatatataatgcaacgtctctatcaactga 316  Q
    ||||||||||||||||||| |||||||||||||||    
T  40800284 ccctacatatataatgcaatgtctctatcaactga 40800318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 327
Target Start/End: Original strand, 48607771 - 48607816
Alignment:
Q  282 ccctacatatataatgcaacgtctctatcaactgagttaaactcac 327  Q
    ||||||||||| |||||||  || ||||||||||||||||||||||    
T  48607771 ccctacatataaaatgcaatatccctatcaactgagttaaactcac 48607816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 34626384 - 34626433
Alignment:
Q  56 attgaggaagggtttatgtgtagctggatcaatcccttgtttcattagtt 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34626384 attgatgaagggtttatgtgtagctggatcaatcccttgtttcattagtt 34626433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 326
Target Start/End: Complemental strand, 5164892 - 5164813
Alignment:
Q  247 tgaataagtgagttatcttgagttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactca 326  Q
    |||||||||||| | |||   ||||||| ||||| |||||||||||||||||||  |||||||||||| |||||||||||    
T  5164892 tgaataagtgagatgtctaaggttcgaattccgacccctacatatataatgcaatatctctatcaactaagttaaactca 5164813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 327
Target Start/End: Complemental strand, 23405291 - 23405199
Alignment:
Q  235 acctttttaagatgaataagtgagttatcttgagttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactcac 327  Q
    ||||||||||| |||||||||| | | ||  | |||||||| |||| |||| ||||||| |||||| ||| ||| |||||||| ||| |||||    
T  23405291 acctttttaaggtgaataagtggggtgtccagggttcgaaccccgacccctgcatatattatgcaatgtccctaccaactgagctaagctcac 23405199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 328
Target Start/End: Original strand, 32648313 - 32648372
Alignment:
Q  269 ttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactcaca 328  Q
    ||||||| |||||| |||||||||| || ||||||||| | ||| |||||||||||||||    
T  32648313 ttcgaaccccgatctctacatatattatacaacgtctcaaacaattgagttaaactcaca 32648372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 328
Target Start/End: Complemental strand, 4230595 - 4230554
Alignment:
Q  287 catatataatgcaacgtctctatcaactgagttaaactcaca 328  Q
    |||||||||||||| |||| ||||||| ||||||||||||||    
T  4230595 catatataatgcaatgtctttatcaacagagttaaactcaca 4230554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 300
Target Start/End: Original strand, 3037595 - 3037658
Alignment:
Q  238 tttttaagatgaataagtgagttatcttgagttcgaactccgatccctacatat-ataatgcaa 300  Q
    ||||||||||||||||||| ||| |||  ||||||||| ||| ||||||||||| |||||||||    
T  3037595 tttttaagatgaataagtgggttgtctgaagttcgaacaccgctccctacatatcataatgcaa 3037658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 327
Target Start/End: Original strand, 33697122 - 33697180
Alignment:
Q  269 ttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactcac 327  Q
    |||||||||||| |||| |||||| |||||||  || |||||||||||||||| |||||    
T  33697122 ttcgaactccgacccctgcatataaaatgcaatatccctatcaactgagttaagctcac 33697180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 28957148 - 28957108
Alignment:
Q  288 atatataatgcaacgtctctatcaactgagttaaactcaca 328  Q
    |||||| |||||| |||| ||||||||||||||||||||||    
T  28957148 atatattatgcaatgtctttatcaactgagttaaactcaca 28957108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 322
Target Start/End: Complemental strand, 32867014 - 32866976
Alignment:
Q  284 ctacatatataatgcaacgtctctatcaactgagttaaa 322  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  32867014 ctacatatattatgcaacgtctctatcaattgagttaaa 32866976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 330
Target Start/End: Original strand, 49233814 - 49233859
Alignment:
Q  285 tacatatataatgcaacgtctctatcaactgagttaaactcacaat 330  Q
    ||||||||| |||||  ||||||||||||||||||||||| |||||    
T  49233814 tacatatattatgcattgtctctatcaactgagttaaacttacaat 49233859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 327
Target Start/End: Original strand, 50376671 - 50376716
Alignment:
Q  282 ccctacatatataatgcaacgtctctatcaactgagttaaactcac 327  Q
    |||| ||||||| |||||| ||||||| ||||||||||||||||||    
T  50376671 ccctgcatatattatgcaatgtctctaccaactgagttaaactcac 50376716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 328
Target Start/End: Complemental strand, 1798229 - 1798143
Alignment:
Q  240 tttaagatgaataagtgagttatcttgagttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactcaca 328  Q
    |||||||||||||||||||  |||  || |||||||||||| || |||||||||||| ||| |||||||| |  ||||||| |||||||    
T  1798229 tttaagatgaataagtgaggaatcagga-ttcgaactccga-ccttacatatataatacaatgtctctattagttgagttatactcaca 1798143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 3948094 - 3948054
Alignment:
Q  287 catatataatgcaacgtctctatcaactgagttaaactcac 327  Q
    ||||||| |||||  ||||||||||||||||||||||||||    
T  3948094 catatattatgcattgtctctatcaactgagttaaactcac 3948054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 18677078 - 18677026
Alignment:
Q  276 tccgatccctacatatataatgcaacgtctctatcaactgagttaaactcaca 328  Q
    |||||||||| ||||||  ||||||||||  || |||||||||||||||||||    
T  18677078 tccgatccctgcatataatatgcaacgtccataccaactgagttaaactcaca 18677026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 35644480 - 35644436
Alignment:
Q  285 tacatatataatgcaacgtctctatcaactgagttaaactcacaa 329  Q
    ||||||||||||| || || |||| ||||||||||||||||||||    
T  35644480 tacatatataatgtaatgtttctaacaactgagttaaactcacaa 35644436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University