View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5814_high_19 (Length: 472)
Name: NF5814_high_19
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 32876143 - 32876604
Alignment:
| Q |
1 |
atccaacctaactatttcagttgagctaggttttatagagccnnnnnnnataaagaaaaagatattaacaatcaagtccatgtacaagacgaacatggac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32876143 |
atccaacctaactatttcagttgagctaggttttatagagccttttcttataaagaaaaagatattaacaatcaagtccatgtacaagacgaacatggac |
32876242 |
T |
|
| Q |
101 |
cgacaatcaaaaaccacaaatcaaaggaatcgtattatacacgtggaacatccaaaatgaaatcataacaacactaatacaaacatcacttaaattgaga |
200 |
Q |
| |
|
|||||| |||||||||||| | ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32876243 |
cgacaaacaaaaaccacaagttaaaggaatcgtattatataggtggaacatccaaaatgaaatcataacaacactaatacaaacatcacttaaattgaga |
32876342 |
T |
|
| Q |
201 |
attaccaccaataccaataagaaacctaactaccaaaatcaaaggcaatacctaaaaacaaacccaaactcccacacttcctcatgagtggctatagaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32876343 |
attaccaccaataccaataagaaacctaactaccaaaatcaaaggcaatacctaaaaacaaacccaaactcccacacttcctcatgagtggctatagaaa |
32876442 |
T |
|
| Q |
301 |
caaaattcaatcacctatcgaatgctaccataacccctccaataaaataaaacccttgaaaacagaagcttaacttcgcatcaccacaactaagcccaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32876443 |
caaaattcaatcacctatcgaatgctaccataacccctccaataaaataaaacccttgaaaacagaagcttaacttcgcatcaccacaactaagcccaat |
32876542 |
T |
|
| Q |
401 |
taaataccagaccaatgacttattccaacacgctttcagattccaccaccgctcgttctctg |
462 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32876543 |
taaacactagaccaatgacttattccaacacgctttcagattccaccaccgctcgttctctg |
32876604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 27044096 - 27044025
Alignment:
| Q |
165 |
ataacaacactaatacaaacatcacttaaattgagaattaccaccaataccaataagaaacctaactaccaa |
236 |
Q |
| |
|
|||| |||| |||| |||||| ||| |||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
27044096 |
ataataacagtaattcaaacaccacctaaattgagagctaccaccaaccccaataagaaacctaactaccaa |
27044025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 455
Target Start/End: Original strand, 15676745 - 15676820
Alignment:
| Q |
380 |
atcaccacaactaagcccaattaaataccagaccaatgacttattccaacacgctttcagattccaccaccgctcg |
455 |
Q |
| |
|
||||||| || | |||||||||||||| | || |||||||||||||||||| |||||| ||||||||||| |||| |
|
|
| T |
15676745 |
atcaccataaatgagcccaattaaatatctgaacaatgacttattccaacattctttcatattccaccaccactcg |
15676820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University