View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_high_22 (Length: 464)
Name: NF5814_high_22
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 13 - 446
Target Start/End: Original strand, 45712705 - 45713138
Alignment:
| Q |
13 |
aatatgttaagcctcctgtagtttatgtgaaaaccaaaagcttggccgaacattatgatcccgaaagtcctaagcatgatcgccacagtcatggacattc |
112 |
Q |
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| T |
45712705 |
aatatgttaagcctcctgtagtttatgtgaaaaccaaaagcttggccgaacattatgatcccgaaagtcctaagcatgatcgccacagtcatggacattc |
45712804 |
T |
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| Q |
113 |
caaaaagggggaacaaggcaagcttatattccttaggcaggatggaataacgtttgatttacaggatttgctaaaggcgtctgctgaaattctaggtagt |
212 |
Q |
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| T |
45712805 |
caaaaagggggaacaaggcaagcttatattccttaggcaggatggaataacgtttgatttacaggatttgctaaaggcgtctgctgaaattctaggtagt |
45712904 |
T |
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| Q |
213 |
gcctcatttgggtcatcgtataaagcggtgattttggacggacttaagtccgtggttgtcaaaaggtacaagcagatgaacaatgtaccgagagaagagt |
312 |
Q |
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| T |
45712905 |
gcctcatttgggtcatcgtataaagcggtgattttggacggacttaagtccgtggttgtcaaaaggtacaagcagatgaacaatgtaccgagagaagagt |
45713004 |
T |
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| Q |
313 |
tccatgagcacatgagaaggttaggaaaccttaaccaccccaatgttctacctctcatttcttattattatagaagagaagagaagcttttgatctctgg |
412 |
Q |
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| T |
45713005 |
tccatgagcacatgagaaggttaggaaaccttaaccaccccaatgttctacctctcatttcttattactatagaagagaagagaagcttttgatctctgg |
45713104 |
T |
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| Q |
413 |
atttgttcacaacggttgcttgggtagtcatctt |
446 |
Q |
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| T |
45713105 |
atttgttcacaacggttgcttgggtagtcatctt |
45713138 |
T |
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