View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5814_high_25 (Length: 442)
Name: NF5814_high_25
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 4114793 - 4114435
Alignment:
| Q |
18 |
atcttcatattcgatactatgctttcggccaaattgaataaggacattaaaataagtaatactaatgtttctacatggacaaggcttgtgcttggagttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4114793 |
atcttcatattcgatactatgctttcggccaaattgaataaggacattaaaataactgatactaatgtttctacatggacaaggcatgtgcttggagttt |
4114694 |
T |
|
| Q |
118 |
gcttagcaagaagattaggtaaaaagagaaca--gagaaataataaaacatatgtgtaagtacgagattacacgttacaacacagttaaactatgatcta |
215 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4114693 |
gcttagcaaga-gattaggtaaaaagagaacatagagaaataataaaacatatgtgtaagtacgagattacacgttacaacacagttaaactttgatcta |
4114595 |
T |
|
| Q |
216 |
catataaatcacatagtttatcatatttatggaaataggcaagcataaataatgagatcaaaattaactaatgctaatgtgtgattaaaattttca---- |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4114594 |
catataaatcacatagtttatcatatttatggaaataggcaagcataaataatgagatcaaaattaactaatgctaatgtgtgattaaaattttcaatat |
4114495 |
T |
|
| Q |
312 |
---------atatgattatgattgtgtaaccaatgatattgcttctcctatgttgttaaa |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4114494 |
ttgttttctatatgattatgattgtgtaaccaatgatattgcttctcctatgttgttaaa |
4114435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 4114435 - 4114386
Alignment:
| Q |
376 |
atgcaaacattccaatgtgggcatttgaggtcctttt-gaagggcatggt |
424 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
4114435 |
atgcaaacattccaatgtgggcattggaggtccttttcaaagggcatggt |
4114386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 48296561 - 48296510
Alignment:
| Q |
306 |
ttttcaatatgattatgattgtgtaaccaatgatattgcttctcctatgttg |
357 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
48296561 |
ttttcattatgactatgattgtgtaaccaatgatattccttcttctatgttg |
48296510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 315
Target Start/End: Complemental strand, 48296674 - 48296565
Alignment:
| Q |
209 |
tgatctacatataaatcacatagtttatcatatttatggaaataggcaagcataaataatgaga--tcaaaat-----taactaatgctaatgtgtgatt |
301 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||| |||||| ||| ||||||||||||| | ||||| |||||| ||||||||||||||| |
|
|
| T |
48296674 |
tgatttacatataaatcacatagtttat----tttatgaaaatagataaggataaataatgagaagtgaaaataaaactaactattgctaatgtgtgatt |
48296579 |
T |
|
| Q |
302 |
aaaattttcaatat |
315 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
48296578 |
aaaatattcaatat |
48296565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University