View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5814_high_30 (Length: 427)

Name: NF5814_high_30

Description: NF5814

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF5814_high_30

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 141; Significance: 9e-74; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 141; E-Value: 9e-74

Query Start/End: Original strand, 35 - 292

Target Start/End: Complemental strand, 53604605 - 53604323

Alignment:

Q	35	tagagagcatggagaactttgattaaagtaagttcttacacaagcaattccaat---------actgaagccaggaaaattgaaaggtgcctcttcagat	125	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	53604605	tagagagcatggagaactttgattaaagtaagttcttaccgaagcaattccaatgcacattatactgaagccaggaaaattaaaaggtgccttttcagat	53604506	T

Q	126	agaaatagagctgaaa------------gtgtttgttacta----attttctgcagtaatatgaacatgatggaacattatgactttccactcacccgtt	209	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	53604505	agaaatagagctaaaaaaaagagaataagtttttgttaatatataattttctgtaataatatgaacatgatgggacattatgagtttccactcacccgtt	53604406	T

Q	210	aatggagagaaagccaagggagatacaatatgtgcaatcgaacatatgcctgagatgcaaccatgagcccttccctgaaagaa	292	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	53604405	aatggagagaaagccaaaggagatacaatatgtgcaatcgaacatatgcctgagatgcaaccttgagcccttccctgaaagaa	53604323	T

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Target: chr3; HSP #2

Raw Score: 40; E-Value: 0.0000000000002

Query Start/End: Original strand, 345 - 392

Target Start/End: Complemental strand, 53604319 - 53604272

Alignment:

Q	345	atccattagaagtttactatgttccaatcatgtcttccttttagtgtg	392	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	53604319	atccattagaagttgactatgttccaatcatgtcttccttttattgtg	53604272	T

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