View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_high_31 (Length: 424)
Name: NF5814_high_31
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_31 |
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Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 32601380 - 32601781
Alignment:
| Q |
1 |
ttctctaacacttataccattattttcacaattatcatacttcaaatagtcgactccctaaagaaaaatttgaaccaatattagttaacaacataagatt |
100 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
32601380 |
ttctctaacgcttataccattattttcacaattatcatacttcaaatagtcgactccctaaagaaaaatttgaaccaatattggttaacaacataaggtt |
32601479 |
T |
|
| Q |
101 |
ataaataggatataataatgttgataaaagtgaaaaatgattttcaaataatgtatgtatatatggtttacccaagaagcaaatgttttggcatcttgta |
200 |
Q |
| |
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| |||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32601480 |
agaaatagaatataa---tgttgataaaattgaaaaatgattttcaaataatgtatgtatatatggtttacccaagaagcaaatgttttggcatcttgta |
32601576 |
T |
|
| Q |
201 |
tttcatgtcccaatgatccaggcatacgtttactacaagtttgatttctgcatagcaattgtaagtgatcataaataatgcttgaacaatcatatttatg |
300 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32601577 |
tttcatgtcctagtgatccaggcatacgtttactacaagtttgatttctgcatagcaattgtaagtgatcataaataatgcttgaacaatcatattcatg |
32601676 |
T |
|
| Q |
301 |
atcatcaaataaaatttaatatgtcgatacccggcatctgaataaattcccaacttcatgcctttcctgtgaatataatgagctagagccttgattcctg |
400 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32601677 |
atcatgaaataaaatttaatatgtcgatacccggcatctgaataaattcccaacttcatgcctttcctgtgaatataatgagctagagccttgattcctg |
32601776 |
T |
|
| Q |
401 |
aagga |
405 |
Q |
| |
|
||||| |
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|
| T |
32601777 |
aagga |
32601781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 32590911 - 32591309
Alignment:
| Q |
1 |
ttctctaacacttataccattattttcacaattatcatacttcaaatagtcgactccctaaagaaaaatttgaaccaatattagttaacaacataagatt |
100 |
Q |
| |
|
||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| || || |||| ||||||||||||||||| |
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|
| T |
32590911 |
ttctctaacgcttataccattattgtgacaattatcatacttcaaatagtcgactccctaaagaaaattttaaatcagtattggttaacaacataagatt |
32591010 |
T |
|
| Q |
101 |
ataaataggatataataatgttgataaaagtgaaaaatgattttcaaataatgtatgtatatatggtttacccaagaagcaaatgttttggcatcttgta |
200 |
Q |
| |
|
||||| | ||||||| |||||||||||||||||||||| ||||||||||||||||||||| || | |||||||||||||||||||||||||||||||| |
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| T |
32591011 |
ataaacaagatataa---tgttgataaaagtgaaaaatgactttcaaataatgtatgtatatgtgatatacccaagaagcaaatgttttggcatcttgta |
32591107 |
T |
|
| Q |
201 |
tttcatgtcccaatgatccaggcatacgtttactacaagtttgatttctgcatagcaattgtaagtgatcataaataatgcttgaacaatcatatttatg |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | | |
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|
| T |
32591108 |
tttcatgtcccaatgatccaggcatacgtttactacaagtttgatttctgcatagcaattgtaagtgatcataaataatgtttgaacaatcatagtcact |
32591207 |
T |
|
| Q |
301 |
atcatcaaataaaatttaatatgtcgatacccggcatctgaataaattcccaacttcatgcctttcctgtgaatataatgagctagagccttgattcctg |
400 |
Q |
| |
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|| | ||| |||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| |
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|
| T |
32591208 |
atta-caa--aaaatttaatatgttgatacccggcatctgaatagattcccaacttcaagcctttcttatgaatataatgagctagagccttgattcctg |
32591304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 262
Target Start/End: Complemental strand, 24883059 - 24882965
Alignment:
| Q |
168 |
ttacccaagaagcaaatgttttggcatcttgtatttcatgtcccaatgatccaggcatacgtttactacaagtttgatttctgcatagcaattgt |
262 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| |||||| || |||||||| ||||| | |||||| || |||||||||||||| || |||||| |
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| T |
24883059 |
ttacccatgaagcaaatgtttttgcatcttgttcttcatgccctaatgatcctggcattcttttactgcatgtttgatttctgcagagaaattgt |
24882965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 24883168 - 24883123
Alignment:
| Q |
18 |
cattattttcacaattatcatacttcaaatagtcgactccctaaag |
63 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| | ||||||||| |
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|
| T |
24883168 |
cattattctcacaattatcatacttcaagtagtcaattccctaaag |
24883123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 3e-95; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 34578736 - 34579126
Alignment:
| Q |
11 |
cttataccattattttcacaattatcatacttcaaatagtcgactccctaaagaaaaatttgaaccaatattagttaacaacataagattataaatagga |
110 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||| |||||||||| |||||||| || ||||| | ||||||||| || ||| ||| ||| | |
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|
| T |
34578736 |
cttattccgttattttcacaattatcatacttcaaatagtcaactccctaaacaaaaatttaaatcaatactggttaacaacctaggat-atatatatgg |
34578834 |
T |
|
| Q |
111 |
tataataatgttgataaaagtgaaaaatgattttcaaataatgtatgtatatatggtttacccaagaagcaaatgttttggcatcttgtatttcatgtcc |
210 |
Q |
| |
|
|||||| ||||||| | | ||| | | ||| | ||||||||| |||| | | |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34578835 |
tataat---gttgatagatatacaaatttacttttgagtaatgtatgcatattttatatacccaagaagcaaatgttttggcatcttgtatttcatgtcc |
34578931 |
T |
|
| Q |
211 |
caatgatccaggcatacgtttactacaagtttgatttctgcatagcaattgtaagtgatcataaataatgcttgaacaatcatatttatgatcatcaaat |
310 |
Q |
| |
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|| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||| |||||||||||| ||| | ||| ||| ||| | |
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|
| T |
34578932 |
cagtgatccaggcatacgtttactacaagttagatttctgcataaaaattgtaagtgatcaaaaatattgcttgaacaattatagtcatgttcaccaagt |
34579031 |
T |
|
| Q |
311 |
aaaatttaatatgtcgatacccggcatctgaataaattcccaacttcatgcctttcctgtgaatataatgagctagagccttgattcctgaagga |
405 |
Q |
| |
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| |||||||| || |||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
34579032 |
acaatttaatgcgttaatacccggcatctgaataaactcccaacttcaagcctttcctatgaatataatgagctagagccttgattcctgaagga |
34579126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 35124416 - 35124813
Alignment:
| Q |
1 |
ttctctaacacttataccattattttcacaattatcatacttcaaatagtcgactccctaaagaaaaatttgaaccaatattagttaacaacataagatt |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | | || ||||||||| || ||| |
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|
| T |
35124416 |
ttctctaacgcttataccattattttcacaattatcatacttcaaatagtcgactccctaaagaaaattttaaattagtgttggttaacaacttataatt |
35124515 |
T |
|
| Q |
101 |
ataaataggatataataatgttgataaaagtgaaaaatgattttcaaataatgtatgtatatatggtttacccaagaagcaaatgttttggcatcttgta |
200 |
Q |
| |
|
|| | ||| ||||| ||| || || |||||| || |||||| ||||| ||||||||||| | |||||||||||||||||||||||||||||||| |
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|
| T |
35124516 |
at-----gcataatataattttggtagaaatgaaaattggctttcaa-taatgaatgtatatatgatatacccaagaagcaaatgttttggcatcttgta |
35124609 |
T |
|
| Q |
201 |
tttcatgtcccaatgatccaggcatacgtttactacaagtttgatttctgcatagcaattgtaagtgatcataaataatgcttgaacaatcatatttatg |
300 |
Q |
| |
|
|||||||||| | |||||||||||| ||||||||||||||| ||||||| |||| |||||| || || |||||||||| || || ||| || ||||| |
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|
| T |
35124610 |
tttcatgtcctagtgatccaggcatgcgtttactacaagttagatttctacataaaaattgt-agatattataaataatggttaaaaaataattgttatg |
35124708 |
T |
|
| Q |
301 |
atcatcaaataaaatttaatatgtcgatacccggcatctgaataaattcccaacttcatgcctttcctgtgaatataatgagctagagccttgattcctg |
400 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| |||||||||||||| |||||||||| ||||||| |||||| ||||||||| |||||||||||||| | |
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|
| T |
35124709 |
atcatcaaatataatttaatatgttgatacccagcatctgaataaatccccaacttcaagcctttcatgtgaacataatgagccagagccttgattcccg |
35124808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 142 - 271
Target Start/End: Original strand, 34594602 - 34594733
Alignment:
| Q |
142 |
tttcaaataatgta-tgtatatatggtt-tacccaagaagcaaatgttttggcatcttgtatttcatgtcccaatgatccaggcatacgtttactacaag |
239 |
Q |
| |
|
|||||||||||||| ||||||||| | ||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||| ||||||||||||| |
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|
| T |
34594602 |
tttcaaataatgtaatgtatatattataatacccaagaagcaaatgttttagcatcttgttcttcatgtcccagtgatccaggcatgcgtttactacaag |
34594701 |
T |
|
| Q |
240 |
tttgatttctgcatagcaattgtaagtgatca |
271 |
Q |
| |
|
| || ||||||||| ||||| ||||||||| |
|
|
| T |
34594702 |
taagagttctgcataaaaattgcaagtgatca |
34594733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 34594444 - 34594504
Alignment:
| Q |
11 |
cttataccattattttcacaattatcatacttcaaatagtcgactccctaaagaaaaattt |
71 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
34594444 |
cttataccattgttttcacaattatcatacttcaaatagtcaattccctaaagaaaaattt |
34594504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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